Sodium in PDB 3iwf: The Crystal Structure of the N-Terminal Domain of A Rpir Transcriptional Regulator From Staphylococcus Epidermidis to 1.4A

The structure of The Crystal Structure of the N-Terminal Domain of A Rpir Transcriptional Regulator From Staphylococcus Epidermidis to 1.4A, PDB code: 3iwf was solved by A.J.Stein, A.Sather, M.Borovilos, M.Bargassa, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.70 / 1.40
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	48.921, 54.028, 173.044, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 20.5

The structure of The Crystal Structure of the N-Terminal Domain of A Rpir Transcriptional Regulator From Staphylococcus Epidermidis to 1.4A also contains other interesting chemical elements:

Nickel	(Ni)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Sodium atom in the The Crystal Structure of the N-Terminal Domain of A Rpir Transcriptional Regulator From Staphylococcus Epidermidis to 1.4A (pdb code 3iwf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of the N-Terminal Domain of A Rpir Transcriptional Regulator From Staphylococcus Epidermidis to 1.4A, PDB code: 3iwf:

Sodium binding site 1 out of 1 in the The Crystal Structure of the N-Terminal Domain of A Rpir Transcriptional Regulator From Staphylococcus Epidermidis to 1.4A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of the N-Terminal Domain of A Rpir Transcriptional Regulator From Staphylococcus Epidermidis to 1.4A within 5.0Å range: probe atom residue distance (Å) B Occ A:Na110 b:22.8 occ:1.00 O A:HOH120 3.1 19.8 1.0 NE2 A:GLN24 3.4 22.1 1.0 ND2 A:ASN28 3.6 14.6 1.0 CG A:GLN24 3.7 16.4 1.0 CA A:PHE25 3.7 13.4 1.0 N A:PHE25 3.8 12.9 1.0 CE2 A:TYR29 3.9 18.5 1.0 O A:GLN24 3.9 13.4 1.0 C A:GLN24 4.0 12.7 1.0 CD A:GLN24 4.1 17.6 1.0 CB A:ASN28 4.1 13.6 1.0 CD2 A:TYR29 4.2 18.4 1.0 CG A:ASN28 4.3 15.6 1.0 CD1 A:PHE25 4.3 18.0 1.0 CB A:PHE25 4.3 14.1 1.0 O A:HOH146 4.4 34.0 1.0 CB A:GLN24 4.5 14.6 1.0 O A:HOH118 4.5 49.3 1.0 CG A:PHE25 4.8 14.9 1.0 CA A:GLN24 4.9 13.4 1.0 C A:PHE25 4.9 13.3 1.0

A.J.Stein, A.Sather, M.Borovilos, M.Bargassa, A.Joachimiak. The Crystal Structure of the N-Terminal Domain of A Rpir Transcriptional Regulator From Staphylococcus Epidermidis to 1.4A To Be Published.