Atomistry » Sodium » PDB 3hwe-3ic9 » 3iax
Atomistry »
  Sodium »
    PDB 3hwe-3ic9 »
      3iax »

Sodium in PDB 3iax: The Crystal Structure of the Tolb Box of Colicin A in Complex with Tolb Reveals Important Differences in the Recruitment of the Common Tolb Translocation Portal Used By Group A Colicins

Protein crystallography data

The structure of The Crystal Structure of the Tolb Box of Colicin A in Complex with Tolb Reveals Important Differences in the Recruitment of the Common Tolb Translocation Portal Used By Group A Colicins, PDB code: 3iax was solved by C.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.955, 40.174, 80.868, 90.00, 97.18, 90.00
R / Rfree (%) 19 / 25.7

Other elements in 3iax:

The structure of The Crystal Structure of the Tolb Box of Colicin A in Complex with Tolb Reveals Important Differences in the Recruitment of the Common Tolb Translocation Portal Used By Group A Colicins also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the The Crystal Structure of the Tolb Box of Colicin A in Complex with Tolb Reveals Important Differences in the Recruitment of the Common Tolb Translocation Portal Used By Group A Colicins (pdb code 3iax). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of the Tolb Box of Colicin A in Complex with Tolb Reveals Important Differences in the Recruitment of the Common Tolb Translocation Portal Used By Group A Colicins, PDB code: 3iax:

Sodium binding site 1 out of 1 in 3iax

Go back to Sodium Binding Sites List in 3iax
Sodium binding site 1 out of 1 in the The Crystal Structure of the Tolb Box of Colicin A in Complex with Tolb Reveals Important Differences in the Recruitment of the Common Tolb Translocation Portal Used By Group A Colicins


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of the Tolb Box of Colicin A in Complex with Tolb Reveals Important Differences in the Recruitment of the Common Tolb Translocation Portal Used By Group A Colicins within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na500

b:24.4
occ:1.00
OD1 A:ASP188 2.6 12.1 1.0
OD2 A:ASP186 2.6 8.7 1.0
NE A:ARG142 2.7 10.5 1.0
NE2 A:HIS146 2.8 7.9 1.0
OD2 A:ASP188 3.1 8.7 1.0
CG A:ASP188 3.3 10.0 1.0
CG A:ASP186 3.4 10.8 1.0
CD A:ARG142 3.5 10.9 1.0
CB A:ASP186 3.5 10.2 1.0
CB A:TYR190 3.5 11.4 1.0
CD2 A:HIS146 3.6 7.6 1.0
CZ A:ARG142 3.6 9.4 1.0
NH2 A:ARG142 3.8 10.1 1.0
CE1 A:HIS146 3.8 8.0 1.0
CB A:ARG142 4.1 15.3 1.0
CG A:TYR190 4.2 12.7 1.0
CG A:ARG142 4.3 13.0 1.0
CD2 A:TYR190 4.4 13.3 1.0
ND2 A:ASN191 4.4 17.2 1.0
CA A:TYR190 4.4 11.2 1.0
O A:TYR190 4.5 11.9 1.0
N A:TYR190 4.5 10.7 1.0
OD1 A:ASP186 4.6 12.0 1.0
C A:TYR190 4.7 11.9 1.0
O A:HOH445 4.7 22.1 1.0
CB A:ASP188 4.8 9.1 1.0
NH1 A:ARG142 4.8 9.6 1.0
CG A:HIS146 4.8 8.7 1.0
ND1 A:HIS146 4.9 8.0 1.0

Reference:

Y.Zhang, C.Li, M.N.Vankemmelbeke, P.Bardelang, M.Paoli, C.N.Penfold, R.James. The Crystal Structure of the Tolb Box of Colicin A in Complex with Tolb Reveals Important Differences in the Recruitment of the Common Tolb Translocation Portal Used By Group A Colicins. Mol.Microbiol. V. 75 623 2009.
ISSN: ISSN 0950-382X
PubMed: 19627502
DOI: 10.1111/J.1365-2958.2009.06808.X
Page generated: Mon Oct 7 10:43:52 2024

Last articles

Ca in 5MU9
Ca in 5MTW
Ca in 5MQP
Ca in 5MU1
Ca in 5MST
Ca in 5MS4
Ca in 5MS9
Ca in 5MQR
Ca in 5MQS
Ca in 5MS3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy