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Sodium in PDB 3i8t: N-Terminal CRD1 Domain of Mouse Galectin-4 in Complex with Lactose

Protein crystallography data

The structure of N-Terminal CRD1 Domain of Mouse Galectin-4 in Complex with Lactose, PDB code: 3i8t was solved by J.Brynda, V.Krejcirikova, P.Rezacova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.56 / 2.10
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 90.841, 90.841, 57.104, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 22.4

Sodium Binding Sites:

The binding sites of Sodium atom in the N-Terminal CRD1 Domain of Mouse Galectin-4 in Complex with Lactose (pdb code 3i8t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the N-Terminal CRD1 Domain of Mouse Galectin-4 in Complex with Lactose, PDB code: 3i8t:

Sodium binding site 1 out of 1 in 3i8t

Go back to Sodium Binding Sites List in 3i8t
Sodium binding site 1 out of 1 in the N-Terminal CRD1 Domain of Mouse Galectin-4 in Complex with Lactose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of N-Terminal CRD1 Domain of Mouse Galectin-4 in Complex with Lactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na169

b:25.8
occ:0.25
O A:HOH170 3.8 21.4 1.0
CG A:PRO121 4.4 32.5 1.0
OE2 A:GLU122 4.5 40.4 0.5
CB A:PRO121 4.6 34.4 1.0
CD A:PRO121 4.9 32.9 1.0
CD A:GLU122 5.0 38.2 0.5

Reference:

V.Krejcirikova, P.Pachl, M.Fabry, P.Maly, P.Rezacova, J.Brynda. Structure of the Mouse Galectin-4 N-Terminal Carbohydrate-Recognition Domain Reveals the Mechanism of Oligosaccharide Recognition Acta Crystallogr.,Sect.D V. 67 204 2011.
ISSN: ISSN 0907-4449
PubMed: 21358051
DOI: 10.1107/S0907444911004082
Page generated: Mon Oct 7 10:43:06 2024

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