Sodium in PDB 3hzn: Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase

The structure of Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase, PDB code: 3hzn was solved by S.M.Anderson, Z.Wawrzak, O.Onopriyenko, T.Skarina, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	280.340, 96.760, 131.840, 90.00, 90.36, 90.00
R / Rfree (%)	17.7 / 22.2

The structure of Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase also contains other interesting chemical elements:

Chlorine

(Cl)

12 atoms

The binding sites of Sodium atom in the Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase (pdb code 3hzn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase, PDB code: 3hzn:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase within 5.0Å range:

Sodium binding site 2 out of 4 in the Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase within 5.0Å range: probe atom residue distance (Å) B Occ C:Na238 b:59.7 occ:1.00 OE2 C:GLU55 3.6 62.8 1.0 N C:GLU54 3.7 37.5 1.0 CB C:THR53 3.7 35.0 1.0 CA C:THR53 3.7 34.8 1.0 CG2 C:THR53 4.1 29.7 1.0 C C:THR53 4.3 37.1 1.0 CG C:GLU54 4.4 49.3 1.0 CD C:GLU55 4.6 65.4 1.0 CB C:GLU54 4.7 38.1 1.0 OE1 C:GLU55 4.8 64.7 1.0 CA C:GLU54 4.8 37.1 1.0 OG1 C:THR53 5.0 34.8 1.0

Sodium binding site 3 out of 4 in the Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase within 5.0Å range: probe atom residue distance (Å) B Occ E:Na226 b:55.7 occ:1.00 CG E:LYS181 3.6 39.6 1.0 CG E:GLU180 3.8 58.6 1.0 CE E:LYS181 4.0 45.2 1.0 CD E:LYS181 4.4 37.7 1.0 CB E:GLU180 4.6 44.3 1.0 N E:LYS181 4.7 40.8 1.0 O E:GLY177 4.7 42.2 1.0 CB E:LYS181 4.8 38.0 1.0 CA E:LYS181 4.8 39.0 1.0 C E:GLU180 4.9 41.6 1.0

Sodium binding site 4 out of 4 in the Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase within 5.0Å range: probe atom residue distance (Å) B Occ H:Na225 b:49.2 occ:1.00 O H:HOH436 3.3 43.8 1.0 N H:LEU210 3.5 38.2 1.0 NE2 G:GLN35 3.5 37.3 1.0 CA H:PRO209 3.8 37.2 1.0 O G:HOH610 3.9 47.1 1.0 CB H:PRO209 4.1 38.1 1.0 CG H:LEU210 4.1 36.9 1.0 C H:PRO209 4.2 37.5 1.0 CB H:LEU210 4.2 34.4 1.0 O H:HOH652 4.3 45.4 1.0 CD1 H:LEU210 4.4 33.0 1.0 CD G:GLN35 4.5 34.3 1.0 CA H:LEU210 4.5 35.9 1.0 OE1 G:GLN35 4.5 43.4 1.0

S.M.Anderson, Z.Wawrzak, O.Onopriyenko, T.Skarina, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectiousdiseases (Csgid). Structure of the Salmonella Typhimurium Nfnb Dihydropteridine Reductase To Be Published.