Sodium in PDB 3hyj: Crystal Structure of the N-Terminal Laglidadg Domain of DUF199/Whia

The structure of Crystal Structure of the N-Terminal Laglidadg Domain of DUF199/Whia, PDB code: 3hyj was solved by B.K.Kaiser, M.C.Clifton, B.W.Shen, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.19 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.448, 79.899, 115.426, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 26

The structure of Crystal Structure of the N-Terminal Laglidadg Domain of DUF199/Whia also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of the N-Terminal Laglidadg Domain of DUF199/Whia (pdb code 3hyj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the N-Terminal Laglidadg Domain of DUF199/Whia, PDB code: 3hyj:

Sodium binding site 1 out of 1 in the Crystal Structure of the N-Terminal Laglidadg Domain of DUF199/Whia


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the N-Terminal Laglidadg Domain of DUF199/Whia within 5.0Å range: probe atom residue distance (Å) B Occ A:Na199 b:7.2 occ:1.00 NE2 A:HIS131 2.2 22.9 1.0 ND1 A:HIS133 2.2 20.4 1.0 CD2 A:HIS131 2.9 24.3 1.0 CE1 A:HIS133 3.0 18.4 1.0 CE1 A:HIS131 3.2 22.9 1.0 CG A:HIS133 3.2 18.8 1.0 CB A:HIS133 3.6 19.8 1.0 O A:HOH222 3.9 13.1 1.0 CG A:HIS131 4.1 23.4 1.0 ND1 A:HIS131 4.2 22.5 1.0 NE2 A:HIS133 4.2 19.4 1.0 CD2 A:HIS133 4.3 19.3 1.0 OG1 A:THR126 4.7 23.8 1.0

B.K.Kaiser, M.C.Clifton, B.W.Shen, B.L.Stoddard. The Structure of A Bacterial DUF199/Whia Protein: Domestication of An Invasive Endonuclease. Structure V. 17 1368 2009.
ISSN: ISSN 0969-2126
PubMed: 19836336
DOI: 10.1016/J.STR.2009.08.008