Sodium in PDB 3hya: Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts

The binding sites of Sodium atom in the Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts (pdb code 3hya). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts, PDB code: 3hya:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts within 5.0Å range: probe atom residue distance (Å) B Occ A:Na9 b:0.0 occ:1.00 O6A A:GCU1 2.5 0.0 1.0 O A:HOH15 2.8 0.0 1.0 C6 A:GCU1 2.9 0.0 1.0 H5 A:GCU1 3.2 0.0 1.0 O6B A:GCU1 3.6 0.0 1.0 C5 A:GCU1 3.6 0.0 1.0 H82 A:NAG2 3.9 0.0 1.0 O5 A:GCU1 4.0 0.0 1.0 HN2 A:NAG2 4.3 0.0 1.0 H1 A:GCU1 4.8 0.0 1.0 C8 A:NAG2 4.9 0.0 1.0

Sodium binding site 2 out of 4 in the Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts within 5.0Å range: probe atom residue distance (Å) B Occ A:Na10 b:0.0 occ:1.00 O6B A:BDP3 2.5 0.0 1.0 O A:HOH13 2.5 0.0 1.0 O A:HOH14 2.7 0.0 1.0 H5 A:NAG2 2.9 0.0 1.0 H3 A:NAG2 3.3 0.0 1.0 O4 A:NAG2 3.5 0.0 1.0 C6 A:BDP3 3.7 0.0 1.0 C5 A:NAG2 3.8 0.0 1.0 O5 A:BDP3 3.9 0.0 1.0 C4 A:NAG2 4.1 0.0 1.0 C3 A:NAG2 4.2 0.0 1.0 H1 A:NAG2 4.2 0.0 1.0 C5 A:BDP3 4.3 0.0 1.0 H61 A:NAG2 4.4 0.0 1.0 H5 A:BDP3 4.5 0.0 1.0 C6 A:NAG2 4.5 0.0 1.0 O6 A:NAG2 4.6 0.0 1.0 O6A A:BDP3 4.7 0.0 1.0 O5 A:NAG2 4.9 0.0 1.0 C1 A:NAG2 4.9 0.0 1.0 C1 A:BDP3 5.0 0.0 1.0

Sodium binding site 3 out of 4 in the Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts within 5.0Å range: probe atom residue distance (Å) B Occ A:Na11 b:0.0 occ:1.00 O6A A:BDP5 2.5 0.0 1.0 O A:HOH19 2.8 0.0 1.0 C6 A:BDP5 2.9 0.0 1.0 H5 A:BDP5 3.2 0.0 1.0 O6B A:BDP5 3.6 0.0 1.0 C5 A:BDP5 3.6 0.0 1.0 H82 A:NAG6 3.9 0.0 1.0 O5 A:BDP5 4.0 0.0 1.0 H3 A:NAG4 4.2 0.0 1.0 HN2 A:NAG6 4.3 0.0 1.0 H1 A:BDP5 4.8 0.0 1.0 C8 A:NAG6 4.9 0.0 1.0

Sodium binding site 4 out of 4 in the Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts within 5.0Å range: probe atom residue distance (Å) B Occ A:Na12 b:0.0 occ:1.00 O6B A:BDP7 2.5 0.0 1.0 O A:HOH17 2.5 0.0 1.0 O A:HOH18 2.7 0.0 1.0 H5 A:NAG6 2.9 0.0 1.0 H3 A:NAG6 3.3 0.0 1.0 O4 A:NAG6 3.5 0.0 1.0 C6 A:BDP7 3.7 0.0 1.0 C5 A:NAG6 3.8 0.0 1.0 O5 A:BDP7 3.9 0.0 1.0 C4 A:NAG6 4.1 0.0 1.0 C3 A:NAG6 4.2 0.0 1.0 H1 A:NAG6 4.2 0.0 1.0 C5 A:BDP7 4.3 0.0 1.0 H61 A:NAG6 4.4 0.0 1.0 H5 A:BDP7 4.5 0.0 1.0 C6 A:NAG6 4.5 0.0 1.0 O6 A:NAG6 4.6 0.0 1.0 O6A A:BDP7 4.7 0.0 1.0 O5 A:NAG6 4.9 0.0 1.0 C1 A:NAG6 4.9 0.0 1.0 C1 A:BDP7 5.0 0.0 1.0

J.M.Guss, D.W.Hukins, P.J.Smith, W.T.Winter, S.Arnott. Hyaluronic Acid: Molecular Conformations and Interactions in Two Sodium Salts. J.Mol.Biol. V. 95 359 1975.
ISSN: ISSN 0022-2836
PubMed: 1152059
DOI: 10.1016/0022-2836(75)90196-5