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Sodium in PDB 3gwq: Crystal Structure of A Putative D-Serine Deaminase (BXE_A4060) From Burkholderia Xenovorans LB400 at 2.00 A Resolution

Enzymatic activity of Crystal Structure of A Putative D-Serine Deaminase (BXE_A4060) From Burkholderia Xenovorans LB400 at 2.00 A Resolution

All present enzymatic activity of Crystal Structure of A Putative D-Serine Deaminase (BXE_A4060) From Burkholderia Xenovorans LB400 at 2.00 A Resolution:
4.3.1.18;

Protein crystallography data

The structure of Crystal Structure of A Putative D-Serine Deaminase (BXE_A4060) From Burkholderia Xenovorans LB400 at 2.00 A Resolution, PDB code: 3gwq was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.88 / 2.00
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 113.637, 113.637, 145.920, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 20.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Putative D-Serine Deaminase (BXE_A4060) From Burkholderia Xenovorans LB400 at 2.00 A Resolution (pdb code 3gwq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Putative D-Serine Deaminase (BXE_A4060) From Burkholderia Xenovorans LB400 at 2.00 A Resolution, PDB code: 3gwq:

Sodium binding site 1 out of 1 in 3gwq

Go back to Sodium Binding Sites List in 3gwq
Sodium binding site 1 out of 1 in the Crystal Structure of A Putative D-Serine Deaminase (BXE_A4060) From Burkholderia Xenovorans LB400 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative D-Serine Deaminase (BXE_A4060) From Burkholderia Xenovorans LB400 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na428

b:38.4
occ:1.00
 O B:HOH816 2.3 47.7 1.0
O B:HOH771 2.4 37.8 1.0
OG1 B:THR10 2.5 24.3 1.0
O B:HOH628 2.5 33.8 1.0
O B:HOH613 2.6 31.3 1.0
O B:THR10 2.6 22.6 1.0
C B:THR10 3.3 23.0 1.0
CB B:THR10 3.6 25.8 1.0
CA B:THR10 3.8 24.0 1.0
N B:THR10 3.8 26.1 1.0
O B:HOH472 3.9 21.9 1.0
O B:ILE11 4.1 22.5 1.0
C B:ILE11 4.3 22.6 1.0
N B:ILE11 4.4 22.8 1.0
N B:ASP12 4.6 22.5 1.0
N B:GLY8 4.6 39.6 1.0
CA B:ASP12 4.8 23.1 1.0
CG2 B:THR10 4.8 20.1 1.0
OE1 B:GLU422 4.9 25.1 1.0
CA B:ILE11 4.9 21.6 1.0
O B:THR24 4.9 27.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Mon Oct 7 10:18:11 2024

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