Sodium in PDB 3gwo: Structure of the C-Terminal Domain of A Putative Hiv-1 GP41 Fusion Intermediate

The structure of Structure of the C-Terminal Domain of A Putative Hiv-1 GP41 Fusion Intermediate, PDB code: 3gwo was solved by J.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.70 / 1.65
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	33.957, 33.957, 174.838, 90.00, 90.00, 120.00
R / Rfree (%)	23.2 / 25.9

The binding sites of Sodium atom in the Structure of the C-Terminal Domain of A Putative Hiv-1 GP41 Fusion Intermediate (pdb code 3gwo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the C-Terminal Domain of A Putative Hiv-1 GP41 Fusion Intermediate, PDB code: 3gwo:

Sodium binding site 1 out of 1 in the Structure of the C-Terminal Domain of A Putative Hiv-1 GP41 Fusion Intermediate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the C-Terminal Domain of A Putative Hiv-1 GP41 Fusion Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ A:Na57 b:72.4 occ:1.00 O B:HOH61 2.4 37.8 1.0 NE1 A:TRP2 3.1 63.3 1.0 CD1 A:TRP2 3.7 62.7 1.0 ND2 B:ASN42 4.0 26.6 1.0 CE2 A:TRP2 4.2 61.6 1.0 CZ2 A:TRP2 4.7 62.7 1.0 CG B:ASN42 4.9 23.1 1.0 CG A:TRP2 5.0 58.4 1.0

J.Liu, Y.Deng, Q.Li, A.K.Dey, J.P.Moore, M.Lu. Role of A Putative GP41 Dimerization Domain in Human Immunodeficiency Virus Type 1 Membrane Fusion. J.Virol. V. 84 201 2010.
ISSN: ISSN 0022-538X
PubMed: 19846514
DOI: 10.1128/JVI.01558-09