Sodium in PDB 3gud: Crystal Structure of A Novel Intramolecular Chaperon

The structure of Crystal Structure of A Novel Intramolecular Chaperon, PDB code: 3gud was solved by E.C.Schulz, A.Dickmanns, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.00 / 2.20
Space group	P 3
Cell size a, b, c (Å), α, β, γ (°)	84.040, 84.040, 41.450, 90.00, 90.00, 120.00
R / Rfree (%)	19.7 / 23.2

The structure of Crystal Structure of A Novel Intramolecular Chaperon also contains other interesting chemical elements:

Bromine	(Br)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the Crystal Structure of A Novel Intramolecular Chaperon (pdb code 3gud). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Novel Intramolecular Chaperon, PDB code: 3gud:

Sodium binding site 1 out of 1 in the Crystal Structure of A Novel Intramolecular Chaperon


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Novel Intramolecular Chaperon within 5.0Å range: probe atom residue distance (Å) B Occ B:Na3 b:49.5 occ:1.00 OD2 B:ASP684 3.0 38.5 1.0 O A:HOH17 3.1 39.6 1.0 CB B:LEU680 3.2 43.9 1.0 OH B:TYR685 3.2 44.9 1.0 O A:GLY679 3.3 49.0 1.0 N B:SER681 3.4 43.4 1.0 CA B:LEU680 3.5 46.3 1.0 CA A:LEU680 3.7 43.8 1.0 CE1 B:TYR685 3.7 38.9 1.0 N A:SER681 3.8 37.2 1.0 CZ B:TYR685 3.8 43.5 1.0 C A:LEU680 3.9 40.7 1.0 CG B:ASP684 3.9 40.0 1.0 C B:LEU680 4.0 43.1 1.0 CB B:ASP684 4.0 40.3 1.0 C A:GLY679 4.2 48.8 1.0 O B:SER681 4.3 40.1 1.0 N A:LEU680 4.4 47.6 1.0 CG B:LEU680 4.4 43.3 1.0 CA B:SER681 4.5 37.0 1.0 CB A:SER681 4.7 36.4 1.0 CD1 B:LEU680 4.7 40.8 1.0 O A:LEU680 4.7 45.5 1.0 N B:LEU680 4.8 49.0 1.0 CB B:SER681 4.8 36.2 1.0 CB A:LEU680 4.8 44.4 1.0 OD2 A:ASP684 4.8 44.3 1.0 CA A:SER681 4.8 36.0 1.0 C B:SER681 4.9 40.9 1.0 CD1 B:TYR685 4.9 38.1 1.0 O B:GLY679 5.0 42.7 1.0

E.C.Schulz, A.Dickmanns, H.Urlaub, A.Schmitt, M.Muhlenhoff, K.Stummeyer, D.Schwarzer, R.Gerardy-Schahn, R.Ficner. Crystal Structure of An Intramolecular Chaperone Mediating Triple-Beta-Helix Folding. Nat.Struct.Mol.Biol. V. 17 210 2010.
ISSN: ISSN 1545-9993
PubMed: 20118935
DOI: 10.1038/NSMB.1746