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Sodium in PDB 3gtd: 2.4 Angstrom Crystal Structure of Fumarate Hydratase From Rickettsia Prowazekii

Enzymatic activity of 2.4 Angstrom Crystal Structure of Fumarate Hydratase From Rickettsia Prowazekii

All present enzymatic activity of 2.4 Angstrom Crystal Structure of Fumarate Hydratase From Rickettsia Prowazekii:
4.2.1.2;

Protein crystallography data

The structure of 2.4 Angstrom Crystal Structure of Fumarate Hydratase From Rickettsia Prowazekii, PDB code: 3gtd was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.74 / 2.40
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 144.900, 144.900, 106.210, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 22.6

Sodium Binding Sites:

The binding sites of Sodium atom in the 2.4 Angstrom Crystal Structure of Fumarate Hydratase From Rickettsia Prowazekii (pdb code 3gtd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 2.4 Angstrom Crystal Structure of Fumarate Hydratase From Rickettsia Prowazekii, PDB code: 3gtd:

Sodium binding site 1 out of 1 in 3gtd

Go back to Sodium Binding Sites List in 3gtd
Sodium binding site 1 out of 1 in the 2.4 Angstrom Crystal Structure of Fumarate Hydratase From Rickettsia Prowazekii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.4 Angstrom Crystal Structure of Fumarate Hydratase From Rickettsia Prowazekii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na463

b:38.2
occ:1.00
O B:HOH537 2.2 20.2 1.0
O A:HOH538 2.4 19.9 1.0
O B:HOH542 2.5 24.1 1.0
OD1 B:ASN343 2.6 17.8 1.0
OD1 A:ASN343 2.7 15.5 1.0
O A:HOH546 2.9 22.7 1.0
NE2 A:GLN339 3.5 19.2 1.0
NE2 B:GLN339 3.7 17.8 1.0
OD1 B:ASN368 3.8 18.7 1.0
CG B:ASN343 3.8 17.7 1.0
CG A:ASN343 3.9 17.8 1.0
OD1 A:ASN368 3.9 18.8 1.0
CD A:GLN339 4.1 18.6 1.0
CD B:GLN339 4.2 18.1 1.0
N B:ASN343 4.3 18.4 1.0
CA B:ASN343 4.3 18.3 1.0
N A:ASN343 4.4 17.9 1.0
CA A:ASN343 4.4 18.1 1.0
OE1 A:GLN339 4.5 16.9 1.0
OE1 B:GLN339 4.6 17.0 1.0
OE1 B:GLN371 4.6 21.3 1.0
OE1 A:GLN371 4.6 20.0 1.0
CB B:ASN343 4.7 18.4 1.0
ND2 B:ASN343 4.7 17.1 1.0
C B:GLY342 4.7 18.5 1.0
ND2 A:ASN343 4.7 19.7 1.0
CB A:ASN343 4.8 17.7 1.0
O B:GLN339 4.8 18.3 1.0
O A:GLN339 4.8 18.8 1.0
C A:GLY342 4.8 18.3 1.0
CG B:ASN368 4.9 17.0 1.0

Reference:

I.Phan, S.Subramanian, C.Olsen, T.E.Edwards, W.Guo, Y.Zhang, W.C.Van Voorhis, L.J.Stewart, P.J.Myler. Structure of Fumarate Hydratase From Rickettsia Prowazekii, the Agent of Typhus and Suspected Relative of the Mitochondria. Acta Crystallogr.,Sect.F V. 67 1123 2011.
ISSN: ESSN 1744-3091
PubMed: 21904061
DOI: 10.1107/S174430911102690X
Page generated: Tue Dec 15 06:12:45 2020

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