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Sodium in PDB 3gsj: A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch

Protein crystallography data

The structure of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch, PDB code: 3gsj was solved by B.M.Zeglis, V.C.Pierre, J.T.Kaiser, J.K.Barton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.59 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 39.020, 39.020, 57.420, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 21.3

Other elements in 3gsj:

The structure of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch also contains other interesting chemical elements:

Rhodium (Rh) 2 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch (pdb code 3gsj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch, PDB code: 3gsj:

Sodium binding site 1 out of 1 in 3gsj

Go back to Sodium Binding Sites List in 3gsj
Sodium binding site 1 out of 1 in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1002

b:45.5
occ:1.00
O A:HOH54 2.6 37.4 1.0
C4' A:DC10 3.8 24.3 1.0
C5' A:DA9 4.0 30.3 1.0
OP1 A:DC10 4.1 38.8 1.0
OP2 A:DC11 4.1 31.8 1.0
O5' A:DC10 4.1 37.4 1.0
O4' A:DC10 4.2 22.2 1.0
O3' A:DC10 4.3 24.9 1.0
OP1 A:DA9 4.4 27.0 1.0
P A:DC11 4.5 27.5 1.0
C5' A:DC10 4.5 27.3 1.0
C4' A:DA9 4.6 30.2 1.0
OP1 A:DC11 4.6 23.6 1.0
O5' A:DA9 4.7 31.1 1.0
C3' A:DC10 4.7 22.5 1.0
C3' A:DA9 4.8 34.1 1.0
P A:DC10 4.8 33.9 1.0

Reference:

B.M.Zeglis, V.C.Pierre, J.T.Kaiser, J.K.Barton. A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch: General Architecture of the Metalloinsertion Binding Mode Biochemistry V. 48 4247 2009.
ISSN: ISSN 0006-2960
PubMed: 19374348
DOI: 10.1021/BI900194E
Page generated: Tue Dec 15 06:12:43 2020

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