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Sodium in PDB 3gp4: Crystal Structure of Putative Merr Family Transcriptional Regulator From Listeria Monocytogenes

Protein crystallography data

The structure of Crystal Structure of Putative Merr Family Transcriptional Regulator From Listeria Monocytogenes, PDB code: 3gp4 was solved by U.A.Ramagopal, R.Toro, C.Morano, S.K.Burley, S.C.Almo, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.85
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 80.647, 80.647, 127.126, 90.00, 90.00, 120.00
R / Rfree (%) 18.2 / 21.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Putative Merr Family Transcriptional Regulator From Listeria Monocytogenes (pdb code 3gp4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Putative Merr Family Transcriptional Regulator From Listeria Monocytogenes, PDB code: 3gp4:

Sodium binding site 1 out of 1 in 3gp4

Go back to Sodium Binding Sites List in 3gp4
Sodium binding site 1 out of 1 in the Crystal Structure of Putative Merr Family Transcriptional Regulator From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Putative Merr Family Transcriptional Regulator From Listeria Monocytogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na159

b:34.7
occ:1.00
O B:SER18 2.4 30.5 1.0
O B:HOH248 2.4 40.2 1.0
O B:HOH222 2.6 48.8 1.0
O B:HOH255 2.8 44.1 1.0
C B:SER18 3.6 29.5 1.0
N B:SER18 3.9 29.5 1.0
NZ B:LYS56 4.0 30.2 1.0
CE B:LYS56 4.3 28.8 1.0
CA B:SER18 4.3 29.9 1.0
OG B:SER18 4.6 29.5 1.0
N B:LEU19 4.6 29.6 1.0
OE1 B:GLU23 4.6 29.4 1.0
CA B:LEU19 4.8 29.4 1.0
O B:HOH273 4.8 41.3 1.0

Reference:

U.A.Ramagopal, R.Toro, C.Morano, S.K.Burley, S.C.Almo. Structure of Putative Merr Family Transcriptional Regulator From Listeria Monocytogenes To Be Published.
Page generated: Mon Oct 7 10:16:33 2024

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