Atomistry » Sodium » PDB 3gdx-3h09 » 3gl5
Atomistry »
  Sodium »
    PDB 3gdx-3h09 »
      3gl5 »

Sodium in PDB 3gl5: Crystal Structure of Probable Dsba Oxidoreductase SCO1869 From Streptomyces Coelicolor

Protein crystallography data

The structure of Crystal Structure of Probable Dsba Oxidoreductase SCO1869 From Streptomyces Coelicolor, PDB code: 3gl5 was solved by C.Chang, X.Xu, H.Cui, A.Savchenko, A.M.Edwards, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.15
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 60.360, 60.360, 132.761, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 24.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Probable Dsba Oxidoreductase SCO1869 From Streptomyces Coelicolor (pdb code 3gl5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Probable Dsba Oxidoreductase SCO1869 From Streptomyces Coelicolor, PDB code: 3gl5:

Sodium binding site 1 out of 1 in 3gl5

Go back to Sodium Binding Sites List in 3gl5
Sodium binding site 1 out of 1 in the Crystal Structure of Probable Dsba Oxidoreductase SCO1869 From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Probable Dsba Oxidoreductase SCO1869 From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:47.7
occ:1.00
O A:ARG130 2.3 31.5 1.0
O A:GLY124 2.4 29.9 1.0
O A:ASP128 2.6 34.4 1.0
O A:HOH241 2.6 26.6 1.0
O A:HOH345 2.8 41.7 1.0
O A:ASN125 2.9 28.4 1.0
C A:ARG130 3.3 32.4 1.0
C A:GLY124 3.5 29.3 1.0
C A:ASN125 3.6 30.0 1.0
CA A:ASN125 3.6 29.9 1.0
C A:ASP128 3.6 35.0 1.0
CA A:SER131 3.8 31.4 1.0
N A:SER131 4.0 31.8 1.0
N A:ASN125 4.0 29.7 1.0
CB A:ASP128 4.2 36.3 1.0
N A:VAL132 4.2 31.3 1.0
C A:GLU129 4.3 35.2 1.0
O A:GLU129 4.3 34.8 1.0
C A:SER131 4.3 30.9 1.0
O A:HOH244 4.4 32.5 1.0
N A:ARG130 4.4 34.3 1.0
CA A:ASP128 4.4 34.8 1.0
OD1 A:ASP94 4.4 29.9 1.0
OD1 A:ASN125 4.4 30.2 1.0
CA A:ARG130 4.5 33.2 1.0
O A:HOH245 4.5 39.2 1.0
N A:GLU129 4.5 35.4 1.0
N A:ASP128 4.6 33.7 1.0
CG1 A:VAL132 4.6 33.5 1.0
N A:PHE126 4.7 30.3 1.0
CA A:GLU129 4.7 35.9 1.0
CA A:GLY124 4.8 29.3 1.0
CB A:ASN125 4.9 29.4 1.0

Reference:

C.Chang, X.Xu, H.Cui, A.Savchenko, A.M.Edwards, A.Joachimiak. Crystal Structure of Probable Dsba Oxidoreductase SCO1869 From Streptomyces Coelicolor To Be Published.
Page generated: Mon Oct 7 10:15:52 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy