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Sodium in PDB 3gir: Crystal Structure of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae

Enzymatic activity of Crystal Structure of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae

All present enzymatic activity of Crystal Structure of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae:
2.1.2.10;

Protein crystallography data

The structure of Crystal Structure of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae, PDB code: 3gir was solved by Seattle Structural Genomics Center For Infectious Disease(Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.01 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.980, 72.670, 138.020, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae (pdb code 3gir). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae, PDB code: 3gir:

Sodium binding site 1 out of 1 in 3gir

Go back to Sodium Binding Sites List in 3gir
Sodium binding site 1 out of 1 in the Crystal Structure of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na373

b:20.8
occ:1.00
 O A:LEU217 2.3 23.7 1.0
O A:ASP219 2.4 21.3 1.0
O A:VAL222 2.4 18.0 1.0
O A:HOH690 2.4 30.6 1.0
O A:HOH582 2.5 24.7 1.0
O A:HOH619 2.5 25.5 1.0
O A:HOH503 3.4 36.3 1.0
C A:ASP219 3.4 22.2 1.0
C A:LEU217 3.5 22.2 1.0
C A:VAL222 3.5 18.3 1.0
N A:VAL222 3.9 18.2 1.0
CA A:SER220 4.0 22.2 1.0
CA A:VAL222 4.1 17.2 1.0
N A:ASP219 4.1 22.6 1.0
N A:SER220 4.2 22.1 1.0
CB A:VAL222 4.2 17.3 1.0
C A:SER220 4.2 21.0 1.0
C A:GLY218 4.2 23.7 1.0
CA A:LEU217 4.3 20.6 1.0
OE2 A:GLU223 4.4 26.6 1.0
O A:SER220 4.4 22.2 1.0
N A:GLY218 4.4 20.5 1.0
CA A:ASP219 4.5 21.3 1.0
O A:HOH438 4.5 43.8 1.0
O A:HOH502 4.5 38.5 1.0
O A:GLY218 4.5 24.5 1.0
CD A:GLU223 4.5 25.6 1.0
N A:GLU223 4.6 17.4 1.0
CA A:GLY218 4.6 22.8 1.0
OE1 A:GLU223 4.6 29.4 1.0
O A:HOH504 4.7 55.3 1.0
N A:ARG221 4.7 19.9 1.0
O A:LEU216 5.0 19.2 1.0
O A:HOH501 5.0 38.5 1.0
CB A:LEU217 5.0 20.8 1.0
CA A:GLU223 5.0 17.8 1.0

Reference:

Seattle Structural Genomics Center For Infectiousdisease (Ssgcid), Seattle Structural Genomics Center For Infectious Disease(Ssgcid). N/A N/A.
Page generated: Tue Dec 15 06:12:31 2020

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