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Sodium in PDB 3gii: DPO4 Extension Ternary Complex with Disordered A Opposite An Oxog in Anti Conformation
Enzymatic activity of DPO4 Extension Ternary Complex with Disordered A Opposite An Oxog in Anti Conformation
All present enzymatic activity of DPO4 Extension Ternary Complex with Disordered A Opposite An Oxog in Anti Conformation:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of DPO4 Extension Ternary Complex with Disordered A Opposite An Oxog in Anti Conformation, PDB code: 3gii
was solved by
O.Rechkoblit,
L.Malinina,
D.J.Patel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 20.00 / 2.60 |
| Space group | P 21 21 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 95.761, 111.646, 52.708, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 20.2 / 26.5 |
Other elements in 3gii:
The structure of DPO4 Extension Ternary Complex with Disordered A Opposite An Oxog in Anti Conformation also contains other interesting chemical elements:
| Calcium | (Ca) | 3 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the DPO4 Extension Ternary Complex with Disordered A Opposite An Oxog in Anti Conformation
(pdb code 3gii). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the DPO4 Extension Ternary Complex with Disordered A Opposite An Oxog in Anti Conformation, PDB code: 3gii:
In total only one binding site of Sodium was determined in the DPO4 Extension Ternary Complex with Disordered A Opposite An Oxog in Anti Conformation, PDB code: 3gii:
Sodium binding site 1 out of 1 in 3gii
Go back to
Sodium Binding Sites List in 3gii
Sodium binding site 1 out
of 1 in the DPO4 Extension Ternary Complex with Disordered A Opposite An Oxog in Anti Conformation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of DPO4 Extension Ternary Complex with Disordered A Opposite An Oxog in Anti Conformation within 5.0Å range:
|
Reference:
O.Rechkoblit,
L.Malinina,
Y.Cheng,
N.E.Geacintov,
S.Broyde,
D.J.Patel.
Impact of Conformational Heterogeneity of Oxog Lesions and Their Pairing Partners on Bypass Fidelity By Y Family Polymerases. Structure V. 17 725 2009.
ISSN: ISSN 0969-2126
PubMed: 19446528
DOI: 10.1016/J.STR.2009.03.011
Page generated: Mon Oct 7 10:15:08 2024
ISSN: ISSN 0969-2126
PubMed: 19446528
DOI: 10.1016/J.STR.2009.03.011
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