Sodium in PDB 3ff1: Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus

All present enzymatic activity of Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus:
5.3.1.9;

The structure of Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus, PDB code: 3ff1 was solved by S.M.Anderson, J.S.Brunzelle, O.Onopriyenko, S.Peterson, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.22 / 1.65
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	163.267, 163.267, 103.732, 90.00, 90.00, 90.00
R / Rfree (%)	14.6 / 17

The binding sites of Sodium atom in the Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus (pdb code 3ff1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus, PDB code: 3ff1:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na444 b:25.1 occ:1.00 O A:HOH1193 2.3 20.8 1.0 O A:LYS70 2.3 14.7 1.0 O A:HOH1195 2.4 30.9 1.0 O A:HOH1194 2.4 25.1 1.0 O A:HOH1076 2.4 28.3 1.0 O A:SER73 2.6 15.1 1.0 C A:LYS70 3.5 15.1 1.0 C A:SER73 3.6 15.1 1.0 O A:HOH726 3.8 20.8 1.0 N A:SER73 4.0 13.8 1.0 CA A:LYS70 4.1 13.9 1.0 O B:HOH1196 4.3 36.1 1.0 CA A:SER73 4.4 13.7 1.0 O A:ILE69 4.4 13.6 1.0 N A:ASP74 4.4 12.5 1.0 C A:GLU71 4.5 15.8 1.0 N A:GLU71 4.5 14.1 1.0 O A:GLU71 4.5 15.9 1.0 O A:HOH794 4.6 27.8 1.0 CA A:ASP74 4.6 10.7 1.0 CA A:GLU71 4.7 17.1 1.0 OD1 A:ASP74 4.7 18.6 1.0 O A:HOH991 4.7 44.0 1.0 N A:ASN72 4.8 15.1 1.0 CG A:LYS70 4.8 15.0 1.0 CG A:PRO106 4.8 14.1 1.0

Sodium binding site 2 out of 4 in the Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na445 b:24.7 occ:1.00 O A:ASN101 2.3 18.7 1.0 O B:HOH750 2.4 22.5 1.0 OE2 B:GLU104 2.4 18.6 1.0 O B:HOH878 2.5 29.3 1.0 OH B:TYR105 2.6 21.1 1.0 CD B:GLU104 3.3 18.9 1.0 C A:ASN101 3.5 16.7 1.0 OE1 B:GLU104 3.5 20.4 1.0 CZ B:TYR105 3.7 18.2 1.0 O B:HOH545 4.0 31.1 1.0 NZ B:LYS70 4.0 19.6 1.0 O A:HOH941 4.1 50.4 1.0 CE2 B:TYR105 4.2 17.6 1.0 N A:SER102 4.3 15.2 1.0 CA A:SER102 4.3 14.2 1.0 CB A:ASN101 4.4 14.7 1.0 CA A:ASN101 4.4 15.6 1.0 CB A:SER102 4.5 17.0 1.0 O B:HOH670 4.6 21.5 1.0 CG B:GLU104 4.6 16.1 1.0 CE1 B:TYR105 4.6 16.1 1.0 O A:HOH800 4.7 43.7 1.0 O B:HOH776 4.7 22.4 1.0

Sodium binding site 3 out of 4 in the Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na446 b:42.5 occ:1.00 O B:HOH565 2.3 31.3 1.0 O B:HOH1198 2.3 33.6 1.0 OG B:SER60 2.5 23.0 1.0 O B:HOH452 2.8 33.1 1.0 CB B:SER60 3.7 18.0 1.0 CA B:SER60 3.8 15.9 1.0 N B:SER60 4.1 15.8 1.0 CD2 B:PHE59 4.2 18.4 1.0 O B:HOH634 4.2 21.0 1.0 O B:LYS56 4.3 19.6 1.0 O B:HOH862 4.6 28.9 1.0 O B:HOH1218 4.6 24.8 0.5 OE2 B:GLU222 4.6 17.5 0.5 CE2 B:PHE59 4.8 18.5 1.0 C B:PHE59 4.8 16.8 1.0

Sodium binding site 4 out of 4 in the Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na447 b:61.6 occ:1.00 O A:HOH1402 2.3 29.2 0.5 O B:HOH980 2.4 44.7 1.0 O B:HOH771 2.4 36.4 1.0 O B:ASN327 2.7 18.8 1.0 O B:HOH978 2.9 48.1 1.0 O B:HOH787 3.1 32.8 1.0 O A:HOH958 3.5 56.6 1.0 O A:HOH871 3.6 41.6 1.0 C B:ASN327 3.6 15.6 1.0 O B:HOH851 3.6 41.0 1.0 O A:HOH985 3.8 41.8 1.0 O B:HOH1046 4.3 48.8 1.0 CA B:HIS328 4.3 12.9 1.0 N B:HIS328 4.3 13.1 1.0 O B:HOH1314 4.4 20.6 0.5 CB B:ASN327 4.5 18.9 1.0 CA B:ASN327 4.5 15.5 1.0 CB B:HIS328 4.6 13.4 1.0 O B:HOH694 4.7 36.9 1.0 O A:HOH1109 4.7 51.5 1.0

S.M.Anderson, J.S.Brunzelle, O.Onopriyenko, S.Peterson, W.F.Anderson, A.Savchenko. Structure of Glucose 6-Phosphate Isomerase From Staphylococcus Aureus To Be Published.