Sodium in PDB 3e6p: Crystal Structure of Human Meizothrombin DESF1

All present enzymatic activity of Crystal Structure of Human Meizothrombin DESF1:
3.4.21.5;

The structure of Crystal Structure of Human Meizothrombin DESF1, PDB code: 3e6p was solved by M.E.Papaconstantinou, P.Gandhi, Z.Chen, A.Bah, E.Di Cera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.58 / 2.10
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	121.336, 121.336, 100.204, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 24.9

The binding sites of Sodium atom in the Crystal Structure of Human Meizothrombin DESF1 (pdb code 3e6p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Meizothrombin DESF1, PDB code: 3e6p:

Sodium binding site 1 out of 1 in the Crystal Structure of Human Meizothrombin DESF1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Meizothrombin DESF1 within 5.0Å range: probe atom residue distance (Å) B Occ H:Na302 b:36.0 occ:1.00 O H:HOH1005 2.2 38.8 1.0 O H:HOH1003 2.2 32.4 1.0 O H:LYS224 2.3 35.7 1.0 O H:ARG221A 2.4 34.6 1.0 O H:HOH1007 2.5 33.8 1.0 O H:HOH1006 2.5 31.1 1.0 C H:LYS224 3.5 35.3 1.0 C H:ARG221A 3.5 34.8 1.0 N H:LYS224 3.9 35.2 1.0 O H:HOH1010 3.9 39.7 1.0 O H:TYR184A 3.9 36.9 1.0 O H:HOH1008 4.1 36.9 1.0 O H:HOH1004 4.1 31.7 1.0 N H:ARG221A 4.1 34.8 1.0 C H:ASP221 4.2 35.9 1.0 CA H:LYS224 4.2 35.1 1.0 N H:GLY223 4.3 35.0 1.0 N H:ASP222 4.3 36.1 1.0 CA H:ASP222 4.3 36.1 1.0 CA H:ASP221 4.4 36.5 1.0 CA H:ARG221A 4.5 34.6 1.0 N H:TYR225 4.5 33.8 1.0 C H:ASP222 4.5 34.9 1.0 CB H:LYS224 4.5 35.2 1.0 O H:ASP221 4.6 36.2 1.0 O H:HOH1011 4.7 37.9 1.0 OD1 H:ASP221 4.7 38.9 1.0 CA H:TYR225 4.8 34.3 1.0 C H:GLY223 4.9 34.2 1.0 CD1 H:TYR225 4.9 33.8 1.0

M.E.Papaconstantinou, P.S.Gandhi, Z.Chen, A.Bah, E.Di Cera. Na(+) Binding to Meizothrombin DESF1. Cell.Mol.Life Sci. V. 65 3688 2008.
ISSN: ISSN 1420-682X
PubMed: 18854941
DOI: 10.1007/S00018-008-8502-7