Sodium in PDB 3e4v: Crystal Structure of Nadh:Fmn Oxidoreductase Like Protein in Complex with Fmn (YP_544701.1) From Methylobacillus Flagellatus Kt at 1.40 A Resolution

The structure of Crystal Structure of Nadh:Fmn Oxidoreductase Like Protein in Complex with Fmn (YP_544701.1) From Methylobacillus Flagellatus Kt at 1.40 A Resolution, PDB code: 3e4v was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.68 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.010, 64.840, 100.170, 90.00, 90.00, 90.00
R / Rfree (%)	11.9 / 15.1

The binding sites of Sodium atom in the Crystal Structure of Nadh:Fmn Oxidoreductase Like Protein in Complex with Fmn (YP_544701.1) From Methylobacillus Flagellatus Kt at 1.40 A Resolution (pdb code 3e4v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Nadh:Fmn Oxidoreductase Like Protein in Complex with Fmn (YP_544701.1) From Methylobacillus Flagellatus Kt at 1.40 A Resolution, PDB code: 3e4v:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Nadh:Fmn Oxidoreductase Like Protein in Complex with Fmn (YP_544701.1) From Methylobacillus Flagellatus Kt at 1.40 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Nadh:Fmn Oxidoreductase Like Protein in Complex with Fmn (YP_544701.1) From Methylobacillus Flagellatus Kt at 1.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:17.6 occ:1.00 O B:HOH423 2.1 23.7 1.0 O B:HOH351 2.5 26.2 1.0 O A:HOH376 2.5 26.9 1.0 O B:HIS39 2.5 9.8 1.0 O A:HIS39 2.6 10.1 1.0 O A:HOH379 2.6 24.9 1.0 C B:HIS39 3.7 8.2 1.0 C A:HIS39 3.8 8.6 1.0 O A:HOH319 3.9 12.4 1.0 O B:HOH422 4.0 28.6 1.0 O B:HOH313 4.0 12.6 1.0 CA A:MSE40 4.0 10.1 0.5 CA B:MSE40 4.0 10.5 0.5 CA A:MSE40 4.1 8.6 0.5 CA B:MSE40 4.2 9.8 0.5 CB A:MSE40 4.2 11.4 0.5 CB B:MSE40 4.3 10.5 0.5 CA A:GLY17 4.4 11.5 1.0 CA B:GLY17 4.4 11.3 1.0 N B:MSE40 4.4 8.5 0.5 N A:MSE40 4.4 9.5 0.5 N B:MSE40 4.4 8.6 0.5 N A:MSE40 4.4 8.8 0.5 CB B:MSE40 4.7 10.2 0.5 CB A:MSE40 4.7 8.7 0.5 ND1 B:HIS39 4.8 14.3 1.0 ND1 A:HIS39 4.8 13.8 1.0 N B:HIS39 4.9 8.3 1.0 CA B:HIS39 4.9 8.8 1.0 N A:HIS39 5.0 8.6 1.0 CA A:HIS39 5.0 8.8 1.0 O B:GLU15 5.0 14.5 1.0 N B:GLY17 5.0 10.9 1.0 N A:GLY17 5.0 11.0 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Nadh:Fmn Oxidoreductase Like Protein in Complex with Fmn (YP_544701.1) From Methylobacillus Flagellatus Kt at 1.40 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Nadh:Fmn Oxidoreductase Like Protein in Complex with Fmn (YP_544701.1) From Methylobacillus Flagellatus Kt at 1.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:37.3 occ:1.00 O B:HOH332 2.2 21.3 1.0 O B:HOH436 2.6 36.2 1.0 OD2 B:ASP110 2.9 34.8 1.0 O B:HOH328 3.1 22.0 1.0 O B:HOH418 3.6 40.9 1.0 CG B:ASP110 3.7 25.6 1.0 OD1 B:ASP110 3.7 30.9 1.0 OE2 B:GLU68 4.5 24.3 1.0 O B:HOH363 5.0 23.1 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.