Sodium in PDB 3cyj: Crystal Structure of A Mandelate Racemase/Muconate Lactonizing Enzyme- Like Protein From Rubrobacter Xylanophilus

The structure of Crystal Structure of A Mandelate Racemase/Muconate Lactonizing Enzyme- Like Protein From Rubrobacter Xylanophilus, PDB code: 3cyj was solved by J.B.Bonanno, J.Freeman, K.T.Bain, F.Zhang, J.Bravo, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.30
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	193.100, 193.100, 113.483, 90.00, 90.00, 90.00
R / Rfree (%)	24.3 / 29.2

The binding sites of Sodium atom in the Crystal Structure of A Mandelate Racemase/Muconate Lactonizing Enzyme- Like Protein From Rubrobacter Xylanophilus (pdb code 3cyj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Mandelate Racemase/Muconate Lactonizing Enzyme- Like Protein From Rubrobacter Xylanophilus, PDB code: 3cyj:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Mandelate Racemase/Muconate Lactonizing Enzyme- Like Protein From Rubrobacter Xylanophilus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Mandelate Racemase/Muconate Lactonizing Enzyme- Like Protein From Rubrobacter Xylanophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na371 b:55.4 occ:1.00 OD2 A:ASP192 2.5 37.7 1.0 OE2 A:GLU219 2.6 49.6 1.0 OE1 A:GLU220 2.7 58.0 1.0 OE1 A:GLU247 3.1 63.0 1.0 OD1 A:ASP192 3.1 36.5 1.0 CG A:ASP192 3.1 36.2 1.0 OD1 A:ASN194 3.3 42.6 1.0 CD A:GLU220 3.3 57.1 1.0 CD A:GLU219 3.4 50.3 1.0 OE2 A:GLU220 3.7 61.5 1.0 O3 A:GOL372 3.7 60.1 1.0 CE1 A:HIS295 3.8 54.5 1.0 CG A:ASN194 4.0 39.6 1.0 OE1 A:GLU219 4.0 49.8 1.0 CD A:GLU247 4.2 59.5 1.0 O A:HOH478 4.2 45.5 1.0 CG A:GLU219 4.3 42.4 1.0 ND2 A:ASN194 4.3 36.8 1.0 CG A:GLU220 4.3 48.2 1.0 O A:HOH479 4.3 43.7 1.0 ND1 A:HIS295 4.5 51.9 1.0 CB A:ASP192 4.6 33.9 1.0 CB A:GLU220 4.7 41.6 1.0 NE2 A:HIS295 4.7 52.9 1.0 NZ A:LYS164 4.7 43.6 1.0 NZ A:LYS162 4.7 36.0 1.0 C3 A:GOL372 4.8 58.8 1.0 CA A:ASN194 4.8 38.2 1.0 CG A:GLU247 4.8 56.8 1.0 CB A:ASN194 4.9 39.0 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Mandelate Racemase/Muconate Lactonizing Enzyme- Like Protein From Rubrobacter Xylanophilus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Mandelate Racemase/Muconate Lactonizing Enzyme- Like Protein From Rubrobacter Xylanophilus within 5.0Å range: probe atom residue distance (Å) B Occ C:Na371 b:58.7 occ:1.00 OE1 C:GLU220 2.3 58.6 1.0 OD2 C:ASP192 2.6 38.4 1.0 OE2 C:GLU219 2.6 51.4 1.0 OE1 C:GLU247 2.8 57.4 1.0 CD C:GLU220 3.2 57.8 1.0 OD1 C:ASP192 3.2 39.0 1.0 CG C:ASP192 3.2 38.6 1.0 O1 C:GOL372 3.4 66.7 1.0 CD C:GLU219 3.4 51.4 1.0 OD1 C:ASN194 3.4 40.3 1.0 OE2 C:GLU220 3.5 64.3 1.0 CD C:GLU247 3.8 54.5 1.0 CG C:ASN194 4.1 37.8 1.0 CE1 C:HIS295 4.1 43.8 1.0 CG C:GLU219 4.1 44.4 1.0 OE1 C:GLU219 4.1 52.5 1.0 CG C:GLU220 4.4 48.4 1.0 OE2 C:GLU247 4.4 57.4 1.0 ND2 C:ASN194 4.5 34.2 1.0 ND1 C:HIS295 4.5 46.5 1.0 CG C:GLU247 4.6 52.0 1.0 CB C:ASP192 4.7 38.6 1.0 C1 C:GOL372 4.8 60.0 1.0 CA C:ASN194 4.8 38.1 1.0 NZ C:LYS164 4.8 41.5 1.0 CB C:GLU220 4.9 42.2 1.0

J.B.Bonanno, J.Freeman, K.T.Bain, F.Zhang, J.Bravo, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of A Mandelate Racemase/Muconate Lactonizing Enzyme-Like Protein From Rubrobacter Xylanophilus. To Be Published.