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Sodium in PDB 3csv: Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution, PDB code: 3csv was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.74 / 2.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.680, 55.940, 61.220, 90.00, 102.90, 90.00
R / Rfree (%) 16.8 / 22.8

Other elements in 3csv:

The structure of Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution (pdb code 3csv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution, PDB code: 3csv:

Sodium binding site 1 out of 1 in 3csv

Go back to Sodium Binding Sites List in 3csv
Sodium binding site 1 out of 1 in the Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na334

b:50.3
occ:1.00
OG A:SER39 3.0 28.8 1.0
OG1 A:THR41 3.3 30.8 1.0
CB A:SER39 3.4 28.6 1.0
O A:HOH420 3.7 42.7 1.0
CB A:ALA43 3.9 25.1 1.0
O A:HOH352 4.1 26.3 1.0
CZ2 A:TRP20 4.6 29.0 1.0
CB A:THR41 4.6 31.9 1.0
N A:THR41 4.8 31.0 1.0
CA A:SER39 4.9 30.2 1.0
CD A:PRO40 4.9 33.3 1.0
N A:ALA43 5.0 25.5 1.0
NE1 A:TRP20 5.0 25.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Dec 15 06:08:02 2020

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