Sodium in PDB 3cpe: Crystal Structure of T4 GP17

The structure of Crystal Structure of T4 GP17, PDB code: 3cpe was solved by S.Sun, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.88 / 2.80
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	119.587, 119.587, 226.301, 90.00, 90.00, 120.00
R / Rfree (%)	25 / 29.1

The binding sites of Sodium atom in the Crystal Structure of T4 GP17 (pdb code 3cpe). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of T4 GP17, PDB code: 3cpe:

Sodium binding site 1 out of 1 in the Crystal Structure of T4 GP17


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of T4 GP17 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na570 b:42.4 occ:1.00 OH A:TYR562 2.7 81.2 1.0 CZ A:TYR562 3.7 78.2 1.0 N A:CYS481 3.8 59.0 1.0 O A:CYS481 3.8 65.2 1.0 CD A:LYS558 3.9 63.7 1.0 CG2 A:ILE480 3.9 53.4 1.0 CE1 A:TYR562 4.0 77.0 1.0 CA A:ILE480 4.1 56.8 1.0 NZ A:LYS558 4.1 62.4 1.0 CE A:LYS558 4.4 63.0 1.0 CB A:ILE480 4.5 55.5 1.0 C A:ILE480 4.5 57.3 1.0 C A:CYS481 4.7 62.6 1.0 CE2 A:TYR562 4.8 76.7 1.0 CA A:CYS481 4.8 60.4 1.0 CG1 A:ILE480 4.8 55.0 1.0 O A:VAL479 4.8 61.6 1.0

S.Sun, K.Kondabagil, B.Draper, T.I.Alam, V.D.Bowman, Z.Zhang, S.Hegde, A.Fokine, M.G.Rossmann, V.B.Rao. The Structure of the Phage T4 Dna Packaging Motor Suggests A Mechanism Dependent on Electrostatic Forces Cell(Cambridge,Mass.) V. 135 1251 2008.
ISSN: ISSN 0092-8674
PubMed: 19109896
DOI: 10.1016/J.CELL.2008.11.015