Sodium in PDB 3cnh: Crystal Structure of Predicted Hydrolase of Haloacid Dehalogenase-Like Superfamily (NP_295428.1) From Deinococcus Radiodurans at 1.66 A Resolution

The structure of Crystal Structure of Predicted Hydrolase of Haloacid Dehalogenase-Like Superfamily (NP_295428.1) From Deinococcus Radiodurans at 1.66 A Resolution, PDB code: 3cnh was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.36 / 1.66
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	74.108, 74.108, 160.923, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 18.7

The binding sites of Sodium atom in the Crystal Structure of Predicted Hydrolase of Haloacid Dehalogenase-Like Superfamily (NP_295428.1) From Deinococcus Radiodurans at 1.66 A Resolution (pdb code 3cnh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Predicted Hydrolase of Haloacid Dehalogenase-Like Superfamily (NP_295428.1) From Deinococcus Radiodurans at 1.66 A Resolution, PDB code: 3cnh:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Predicted Hydrolase of Haloacid Dehalogenase-Like Superfamily (NP_295428.1) From Deinococcus Radiodurans at 1.66 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Predicted Hydrolase of Haloacid Dehalogenase-Like Superfamily (NP_295428.1) From Deinococcus Radiodurans at 1.66 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na200 b:25.7 occ:1.00 O A:HOH203 2.3 25.5 1.0 O A:GLY11 2.3 38.5 1.0 OD1 A:ASP165 2.3 40.3 1.0 O A:HOH204 2.3 42.0 1.0 OD2 A:ASP9 2.4 43.4 1.0 O2 A:PO4201 2.6 26.6 0.8 CG A:ASP9 3.1 44.7 1.0 OD1 A:ASP9 3.1 38.1 1.0 CG A:ASP165 3.3 40.9 1.0 C A:GLY11 3.5 35.9 1.0 OD2 A:ASP165 3.8 47.5 1.0 OD1 A:ASP164 4.0 35.5 1.0 NE A:ARG166 4.1 49.3 1.0 O A:HOH343 4.1 36.2 1.0 P A:PO4201 4.1 27.1 0.8 OD1 A:ASN17 4.3 43.3 1.0 N A:GLY12 4.3 35.3 1.0 CA A:GLY11 4.4 35.6 1.0 N A:ASP165 4.4 33.4 1.0 CA A:GLY12 4.5 36.4 1.0 CB A:ASP9 4.5 35.5 1.0 CB A:ASP165 4.5 34.9 1.0 CG A:ASP164 4.6 35.2 1.0 O1 A:PO4201 4.6 21.1 0.8 CG A:ARG166 4.6 39.9 1.0 OD2 A:ASP164 4.7 37.0 1.0 N A:GLY11 4.7 33.9 1.0 CD A:ARG166 4.8 44.3 1.0 NH2 A:ARG166 4.8 58.3 1.0 O4 A:PO4201 4.9 28.8 0.8 CG2 A:VAL13 4.9 36.0 1.0 CZ A:ARG166 4.9 56.8 1.0 CA A:ASP165 4.9 34.2 1.0 C A:GLY12 5.0 37.0 1.0 O3 A:PO4201 5.0 24.6 0.8

Sodium binding site 2 out of 2 in the Crystal Structure of Predicted Hydrolase of Haloacid Dehalogenase-Like Superfamily (NP_295428.1) From Deinococcus Radiodurans at 1.66 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Predicted Hydrolase of Haloacid Dehalogenase-Like Superfamily (NP_295428.1) From Deinococcus Radiodurans at 1.66 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na200 b:27.0 occ:1.00 O B:HOH406 2.2 29.9 0.5 O B:GLY11 2.3 37.4 1.0 O B:HOH303 2.3 27.8 1.0 OD1 B:ASP165 2.4 36.5 1.0 OD2 B:ASP9 2.4 51.3 1.0 O B:HOH406 2.4 27.5 0.5 O3 B:PO4201 2.6 34.5 0.8 CG B:ASP9 3.2 44.8 1.0 OD1 B:ASP9 3.3 39.3 1.0 CG B:ASP165 3.3 36.9 1.0 C B:GLY11 3.4 36.6 1.0 OD2 B:ASP165 3.6 38.7 1.0 O B:HOH401 4.0 47.9 1.0 P B:PO4201 4.0 31.2 0.8 OD1 B:ASP164 4.1 35.5 1.0 NE B:ARG166 4.1 58.4 1.0 OD1 B:ASN17 4.2 44.4 1.0 N B:GLY12 4.3 36.1 1.0 CA B:GLY12 4.3 36.3 1.0 CA B:GLY11 4.4 34.7 1.0 O4 B:PO4201 4.5 28.9 0.8 CB B:ASP9 4.6 34.1 1.0 N B:ASP165 4.6 33.5 1.0 CB B:ASP165 4.6 35.1 1.0 CG B:ASP164 4.7 34.7 1.0 CG B:ARG166 4.7 41.5 1.0 OD2 B:ASP164 4.7 37.1 1.0 CD B:ARG166 4.7 50.1 1.0 N B:GLY11 4.8 34.8 1.0 O1 B:PO4201 4.8 33.1 0.8 CG2 B:VAL13 4.9 33.1 1.0 C B:GLY12 4.9 36.5 1.0 O2 B:PO4201 4.9 31.4 0.8

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.