Sodium in PDB 3clo: Crystal Structure of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (NP_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.04 A Resolution

The structure of Crystal Structure of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (NP_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.04 A Resolution, PDB code: 3clo was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.45 / 2.04
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	233.650, 233.650, 125.273, 90.00, 90.00, 120.00
R / Rfree (%)	18.7 / 21.7

The structure of Crystal Structure of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (NP_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.04 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

7 atoms

The binding sites of Sodium atom in the Crystal Structure of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (NP_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.04 A Resolution (pdb code 3clo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (NP_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.04 A Resolution, PDB code: 3clo:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (NP_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.04 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (NP_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.04 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Na258 b:39.0 occ:1.00 O C:HOH370 2.2 52.8 1.0 O C:GLU169 2.5 38.9 1.0 O C:GLY171 2.5 35.4 1.0 O C:HOH294 2.6 33.5 1.0 O C:HOH284 2.6 30.1 1.0 O C:HOH321 2.9 40.6 1.0 C C:GLY171 3.5 36.0 1.0 C C:GLU169 3.7 40.2 1.0 O C:HOH295 3.8 32.9 1.0 N C:GLY171 3.8 38.1 1.0 CE1 C:TYR137 4.1 35.0 1.0 CA C:GLY171 4.2 37.1 1.0 N C:GLU169 4.2 38.9 1.0 C C:GLN170 4.3 39.5 1.0 NE C:ARG127 4.4 36.5 1.0 O C:HOH384 4.5 55.0 1.0 OD1 C:ASP94 4.5 33.2 1.0 N C:ILE172 4.5 34.7 1.0 CA C:GLU169 4.6 40.5 1.0 CA C:GLN170 4.6 41.5 1.0 N C:GLN170 4.6 40.7 1.0 CZ C:ARG127 4.6 37.3 1.0 OH C:TYR137 4.6 32.3 1.0 NH2 C:ARG127 4.7 33.8 1.0 O C:HOH336 4.7 45.7 1.0 CG C:GLU169 4.7 49.9 1.0 OD2 C:ASP94 4.7 34.2 1.0 CA C:ILE172 4.8 34.1 1.0 CZ C:TYR137 4.9 34.5 1.0 O C:GLN170 4.9 42.3 1.0 CD1 C:TYR137 4.9 37.3 1.0 O C:ARG125 4.9 40.8 1.0 CD C:ARG127 5.0 34.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (NP_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.04 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (NP_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.04 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Na259 b:44.2 occ:1.00 O C:HOH300 2.2 33.7 1.0 O C:ARG181 2.3 31.8 1.0 O C:HOH338 2.3 45.0 1.0 O C:HOH282 2.5 30.6 1.0 O C:HOH337 2.7 44.9 1.0 O C:HOH340 2.7 46.5 1.0 C C:ARG181 3.5 34.7 1.0 O C:GLY182 4.3 37.0 1.0 CA C:ARG181 4.3 36.1 1.0 CG C:GLU183 4.3 45.3 1.0 O C:HOH293 4.3 33.4 1.0 CB C:ARG181 4.4 34.1 1.0 C C:GLY182 4.4 37.0 1.0 N C:GLY182 4.5 33.1 1.0 CA C:GLY182 4.6 35.6 1.0 OE2 C:GLU183 4.6 53.3 1.0 CD C:GLU183 5.0 57.2 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.