Sodium in the structure of Structure of the Pduo-Type Atp:Co(I)Rrinoid Adenosyltransferase From Lactobacillus Reuteri Complexed With Partial Adenosylcobalamin and Pppi (pdb 3ci3)

The binding sites of Sodium atom in the structure of Structure of the Pduo-Type Atp:Co(I)Rrinoid Adenosyltransferase From Lactobacillus Reuteri Complexed With Partial Adenosylcobalamin and Pppi (pdb code 3ci3). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3ci3 structure was solved by M.ST.MAURICE, P.E.MERA, J.C.ESCALANTE-SEMERENA, I.RAYMENT, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 30.0-1.1 Space group H3 a (A) 67.965 b (A) 67.965 c (A) 110.941 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 16 Rfree (%) 18 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3ci3 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3ci3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ile3, A: Tyr4, A: Thr5, A: Mg190, A: 3po901, A: B12800, A: Hoh906, A: Hoh911, conact list: Atom Atom Distance (A) Na O A:Ile3 2.56 Na CB A:Ile3 4.89 Na C A:Ile3 3.61 Na CA A:Ile3 4.75 Na N A:Tyr4 4.19 Na CB A:Tyr4 4.85 Na C A:Tyr4 4.75 Na CA A:Tyr4 3.95 Na N A:Thr5 4.41 Na MG A:Mg190 3.78 Na O1B A:3po901 4.77 Na PG A:3po901 3.34 Na PB A:3po901 4.59 Na O3B A:3po901 4.20 Na O2G A:3po901 4.63 Na PA A:3po901 3.14 Na O5' A:3po901 4.54 Na O3G A:3po901 3.27 Na O1G A:3po901 2.47 Na O3A A:3po901 3.83 Na O1A A:3po901 2.54 Na O2A A:3po901 2.73 Na O28 A:B12800 4.04 Na C35 A:B12800 3.63 Na C37 A:B12800 4.75 Na C5 A:B12800 4.57 Na O A:Hoh906 3.95 Na O A:Hoh911 3.68 interactive model: