Sodium in PDB 3cgl: Crystal Structure and Raman Studies of DSFP483, A Cyan Fluorescent Protein From Discosoma Striata

The structure of Crystal Structure and Raman Studies of DSFP483, A Cyan Fluorescent Protein From Discosoma Striata, PDB code: 3cgl was solved by G.D.Malo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.09
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	111.202, 78.269, 188.566, 90.00, 91.35, 90.00
R / Rfree (%)	18.5 / 21.7

The binding sites of Sodium atom in the Crystal Structure and Raman Studies of DSFP483, A Cyan Fluorescent Protein From Discosoma Striata (pdb code 3cgl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure and Raman Studies of DSFP483, A Cyan Fluorescent Protein From Discosoma Striata, PDB code: 3cgl:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure and Raman Studies of DSFP483, A Cyan Fluorescent Protein From Discosoma Striata


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure and Raman Studies of DSFP483, A Cyan Fluorescent Protein From Discosoma Striata within 5.0Å range: probe atom residue distance (Å) B Occ A:Na233 b:12.9 occ:1.00 O C:HOH481 1.9 15.7 1.0 OD2 C:ASP176 2.2 25.6 1.0 OD1 A:ASP176 2.3 23.0 1.0 O A:HOH353 2.3 26.0 1.0 O A:HOH393 2.6 23.0 1.0 O C:HOH448 2.7 21.2 1.0 CG A:ASP176 3.4 19.2 1.0 O C:HOH473 3.4 22.9 1.0 CG C:ASP176 3.4 23.2 1.0 CB A:ASP176 3.9 17.2 1.0 O C:HOH395 4.2 8.9 1.0 CB C:ASP176 4.3 19.6 1.0 OD1 C:ASP176 4.3 24.2 1.0 OD2 A:ASP176 4.5 21.2 1.0 O A:HOH297 4.6 16.6 1.0 O C:HOH488 4.7 27.1 1.0 O C:HOH482 4.8 25.1 1.0 O C:HOH384 4.8 3.5 1.0 O C:HOH477 4.9 21.6 1.0 O A:HOH394 5.0 32.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure and Raman Studies of DSFP483, A Cyan Fluorescent Protein From Discosoma Striata


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure and Raman Studies of DSFP483, A Cyan Fluorescent Protein From Discosoma Striata within 5.0Å range: probe atom residue distance (Å) B Occ B:Na233 b:11.9 occ:1.00 OD1 B:ASP176 2.2 24.1 1.0 O B:HOH252 2.2 21.1 1.0 OD2 D:ASP176 2.3 23.5 1.0 O D:HOH349 2.6 22.5 1.0 O B:HOH317 2.9 30.7 1.0 CG B:ASP176 3.4 21.2 1.0 CG D:ASP176 3.5 21.5 1.0 CB B:ASP176 4.0 19.2 1.0 CB D:ASP176 4.1 20.3 1.0 O D:HOH338 4.3 20.7 1.0 O B:HOH249 4.4 20.9 1.0 OD2 B:ASP176 4.4 22.5 1.0 OD1 D:ASP176 4.4 23.1 1.0

G.D.Malo, M.Wang, D.Wu, A.L.Stelling, P.J.Tonge, R.M.Wachter. Crystal Structure and Raman Studies of DSFP483, A Cyan Fluorescent Protein From Discosoma Striata. J.Mol.Biol. V. 378 869 2008.
ISSN: ISSN 0022-2836
PubMed: 18395223
DOI: 10.1016/J.JMB.2008.02.069