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Sodium in PDB 3c87: Crystal Structure of the Enterobactin Esterase Fes From Shigella Flexneri in the Presence of Enterobactin

Protein crystallography data

The structure of Crystal Structure of the Enterobactin Esterase Fes From Shigella Flexneri in the Presence of Enterobactin, PDB code: 3c87 was solved by Y.Kim, N.Maltseva, R.Abergel, K.Raymond, D.Holzle, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.03 / 2.17
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.305, 113.245, 151.123, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Enterobactin Esterase Fes From Shigella Flexneri in the Presence of Enterobactin (pdb code 3c87). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Enterobactin Esterase Fes From Shigella Flexneri in the Presence of Enterobactin, PDB code: 3c87:

Sodium binding site 1 out of 1 in 3c87

Go back to Sodium Binding Sites List in 3c87
Sodium binding site 1 out of 1 in the Crystal Structure of the Enterobactin Esterase Fes From Shigella Flexneri in the Presence of Enterobactin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Enterobactin Esterase Fes From Shigella Flexneri in the Presence of Enterobactin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na501

b:43.3
occ:1.00
O A:ASP156 2.4 36.7 1.0
O A:HOH551 2.5 38.1 1.0
O A:HOH550 2.6 47.7 1.0
O A:HOH645 2.6 50.2 1.0
C A:ASP156 3.5 36.1 1.0
CA A:ASP156 4.2 36.7 1.0
CB A:ASP156 4.3 36.9 1.0
O A:HOH644 4.4 37.9 1.0
N A:CYS157 4.6 36.4 1.0
CA A:CYS157 4.9 37.0 1.0

Reference:

Y.Kim, N.Maltseva, R.Abergel, K.Raymond, D.Holzle, A.Joachimiak. Siderophore Mediated Iron Acquisition: Structure and Specificity of Enterobactin Esterase From Shigella Flexneri. To Be Published.
Page generated: Mon Oct 7 06:13:22 2024

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