Sodium in PDB 3c6v: Crystal Structure of AU4130/APC7354, A Probable Enzyme From the Thermophilic Fungus Aspergillus Fumigatus

The structure of Crystal Structure of AU4130/APC7354, A Probable Enzyme From the Thermophilic Fungus Aspergillus Fumigatus, PDB code: 3c6v was solved by A.U.Singer, T.A.Binkowski, T.Skarina, O.Kagan, A.M.Edwards, A.Joachimiak, A.Savchenko, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.32 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.136, 66.913, 128.507, 90.00, 90.00, 90.00
R / Rfree (%)	15.7 / 19.7

The structure of Crystal Structure of AU4130/APC7354, A Probable Enzyme From the Thermophilic Fungus Aspergillus Fumigatus also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of AU4130/APC7354, A Probable Enzyme From the Thermophilic Fungus Aspergillus Fumigatus (pdb code 3c6v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of AU4130/APC7354, A Probable Enzyme From the Thermophilic Fungus Aspergillus Fumigatus, PDB code: 3c6v:

Sodium binding site 1 out of 1 in the Crystal Structure of AU4130/APC7354, A Probable Enzyme From the Thermophilic Fungus Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of AU4130/APC7354, A Probable Enzyme From the Thermophilic Fungus Aspergillus Fumigatus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na141 b:39.2 occ:1.00 OD2 C:ASP111 2.5 31.4 1.0 OH B:TYR-3 2.9 16.5 1.0 OD1 C:ASP111 2.9 30.9 1.0 CG C:ASP111 3.1 26.0 1.0 NH2 B:ARG71 3.2 21.8 1.0 CZ B:ARG71 3.4 23.6 1.0 NH1 B:ARG71 3.5 19.9 1.0 CE2 B:TYR-3 3.5 18.1 1.0 O C:HOH437 3.7 33.2 1.0 CZ B:TYR-3 3.7 19.6 1.0 CG2 B:THR74 3.8 18.2 1.0 OG1 B:THR74 3.9 18.8 1.0 NE B:ARG71 4.2 22.1 1.0 CD B:ARG79 4.2 26.3 1.0 CD1 C:LEU112 4.3 15.1 1.0 CB B:THR74 4.4 18.4 1.0 O B:HOH239 4.4 38.7 1.0 NH1 B:ARG79 4.5 30.8 1.0 CB C:PRO109 4.5 16.0 1.0 CG C:LEU112 4.6 15.6 1.0 CB C:ASP111 4.6 19.9 1.0 CA B:THR74 4.8 17.4 1.0 CD2 B:TYR-3 4.8 20.0 1.0 CG B:ARG79 4.9 22.7 1.0

A.U.Singer, T.A.Binkowski, T.Skarina, O.Kagan, A.M.Edwards, A.Joachimiak, A.Savchenko. Crystal Structure of AU4130/APC7354, A Probable Enzyme From the Thermophilic Fungus Aspergillus Fumigatus. To Be Published.