Sodium in PDB 3c3v: Crystal Structure of Peanut Major Allergen Ara H 3

The structure of Crystal Structure of Peanut Major Allergen Ara H 3, PDB code: 3c3v was solved by T.Jin, Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.63 / 1.73
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	144.929, 144.929, 86.924, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 24.8

The binding sites of Sodium atom in the Crystal Structure of Peanut Major Allergen Ara H 3 (pdb code 3c3v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Peanut Major Allergen Ara H 3, PDB code: 3c3v:

Sodium binding site 1 out of 1 in the Crystal Structure of Peanut Major Allergen Ara H 3


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Peanut Major Allergen Ara H 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1 b:29.3 occ:1.00 OG A:SER431 3.1 28.9 1.0 O A:HOH604 3.2 32.8 1.0 O A:HOH697 3.3 67.8 1.0 N A:SER431 3.5 29.5 1.0 CZ A:PHE453 3.6 26.5 1.0 CB A:ASP430 3.8 28.5 1.0 CB A:SER431 3.8 29.3 1.0 CE1 A:PHE453 3.8 25.3 1.0 CG A:ASP430 4.1 29.6 1.0 O A:CYS32 4.1 31.0 1.0 OD2 A:ASP430 4.2 34.1 1.0 CA A:SER431 4.2 29.8 1.0 ND2 A:ASN432 4.4 45.1 1.0 C A:ASP430 4.4 30.1 1.0 CA A:ASP430 4.5 29.2 1.0 CE2 A:PHE453 4.7 26.7 1.0 OD1 A:ASP430 4.8 30.2 1.0 CD1 A:PHE453 4.9 26.9 1.0 N A:ASN432 4.9 32.5 1.0

T.Jin, F.Guo, Y.W.Chen, A.Howard, Y.Z.Zhang. Crystal Structure of Ara H 3, A Major Allergen in Peanut. Mol.Immunol. V. 46 1796 2009.
ISSN: ISSN 0161-5890
PubMed: 19251323
DOI: 10.1016/J.MOLIMM.2009.01.023