Sodium in PDB 3c0v: Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12

The structure of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12, PDB code: 3c0v was solved by O.Pasternak, A.Bujacz, J.Biesiadka, G.Bujacz, M.Sikorski, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.31 / 1.80
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	113.219, 113.219, 85.077, 90.00, 90.00, 120.00
R / Rfree (%)	15.8 / 20.7

The structure of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 also contains other interesting chemical elements:

Bromine	(Br)	60 atoms
Tantalum	(Ta)	30 atoms

The binding sites of Sodium atom in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 (pdb code 3c0v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12, PDB code: 3c0v:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na156 b:29.7 occ:1.00 O B:ILE126 2.3 24.1 1.0 O B:HOH255 2.3 34.7 1.0 O B:HOH256 2.4 33.5 1.0 O B:HOH172 2.4 23.2 1.0 O B:ASP123 2.5 25.1 1.0 O B:HOH208 2.6 31.6 1.0 C B:ILE126 3.5 24.0 1.0 C B:ASP123 3.6 25.1 1.0 CA B:SER124 3.9 25.8 1.0 C B:SER124 4.0 25.4 1.0 N B:ILE126 4.0 21.1 1.0 N B:SER124 4.2 25.4 1.0 O B:SER124 4.2 26.8 1.0 O B:GLU128 4.2 28.2 1.0 CA B:ILE126 4.2 22.9 1.0 CE B:LYS129 4.2 42.5 1.0 N B:ASP123 4.5 25.4 1.0 N B:GLU127 4.5 24.4 1.0 N B:ASP125 4.5 23.9 1.0 CB B:ILE126 4.6 23.2 1.0 O B:GLU127 4.6 25.1 1.0 O B:HOH303 4.6 43.9 1.0 CB B:HIS122 4.6 25.4 1.0 CA B:ASP123 4.7 24.7 1.0 C B:GLU127 4.7 26.0 1.0 CA B:GLU127 4.8 25.9 1.0 NZ B:LYS129 4.9 43.1 1.0 O B:GLY94 4.9 23.0 1.0 BR6 C:TBR157 4.9 21.8 0.3 C B:ASP125 5.0 22.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na156 b:38.9 occ:1.00 O C:HOH243 2.2 36.4 1.0 O C:HOH203 2.3 46.5 1.0 O C:HOH314 2.5 51.3 1.0 O C:ILE126 2.6 25.1 1.0 O C:HOH272 2.6 42.6 1.0 O C:SER124 2.7 24.3 1.0 O C:HOH271 3.3 41.4 1.0 C C:SER124 3.5 24.4 1.0 C C:ILE126 3.6 22.8 1.0 O A:HOH183 3.8 38.4 1.0 CA C:SER124 4.0 24.5 1.0 O C:ASP123 4.2 24.6 1.0 N C:ILE126 4.2 21.7 1.0 CA C:GLU127 4.2 23.6 1.0 N C:GLU127 4.3 22.6 1.0 O C:GLU127 4.3 24.2 1.0 O C:HOH200 4.4 28.8 1.0 O A:HOH215 4.4 44.1 1.0 N C:ASP125 4.5 22.1 1.0 O C:HOH212 4.5 40.3 1.0 CA C:ILE126 4.5 21.7 1.0 C C:ASP125 4.5 21.3 1.0 O C:HOH183 4.6 28.9 1.0 C C:GLU127 4.6 24.8 1.0 CA C:ASP125 4.8 21.8 1.0 CB C:SER124 4.9 27.0 1.0

O.Pasternak, A.Bujacz, J.Biesiadka, G.Bujacz, M.Sikorski, M.Jaskolski. Mad Phasing Using the (Ta(6)Br(12))(2+) Cluster: A Retrospective Study Acta Crystallogr.,Sect.D V. 64 595 2008.
ISSN: ISSN 0907-4449
PubMed: 18453695
DOI: 10.1107/S0907444908007853