Sodium in PDB 3c0s: Uvde 3 Metals

The structure of Uvde 3 Metals, PDB code: 3c0s was solved by E.M.Meulenbroek, K.Paspaleva, E.A.J.Thomassen, J.P.Abrahams, N.Goosen, N.S.Pannu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.41 / 1.80
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	37.137, 47.562, 48.250, 99.50, 111.39, 109.02
R / Rfree (%)	20.2 / 27.5

The structure of Uvde 3 Metals also contains other interesting chemical elements:

Manganese

(Mn)

3 atoms

The binding sites of Sodium atom in the Uvde 3 Metals (pdb code 3c0s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Uvde 3 Metals, PDB code: 3c0s:

Sodium binding site 1 out of 1 in the Uvde 3 Metals


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Uvde 3 Metals within 5.0Å range: probe atom residue distance (Å) B Occ A:Na284 b:46.1 occ:1.00 O A:HOH324 2.5 29.7 1.0 O A:HOH544 2.7 40.9 1.0 N A:ARG255 3.7 14.6 1.0 CA A:ARG255 3.8 16.7 1.0 C A:GLU254 3.9 16.9 1.0 CB A:GLU254 4.0 17.9 1.0 O A:HOH378 4.1 25.9 1.0 CG A:ARG255 4.1 20.4 1.0 O A:GLU254 4.2 15.2 1.0 OG A:SER258 4.2 23.7 1.0 CB A:ARG255 4.5 15.6 1.0 CA A:GLU254 4.6 16.1 1.0 CB A:SER258 4.8 19.8 1.0 O A:GLU251 4.9 16.1 1.0 OE1 A:GLU254 5.0 33.8 1.0

E.M.Meulenbroek, K.Paspaleva, E.A.Thomassen, J.P.Abrahams, N.Goosen, N.S.Pannu. Involvement of A Carboxylated Lysine in Uv Damage Endonuclease Protein Sci. V. 18 549 2009.
ISSN: ISSN 0961-8368
PubMed: 19241382
DOI: 10.1002/PRO.54