Sodium in PDB 3bnt: Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]CL3 (A1555G Mutant, Br-Derivative)

The structure of Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]CL3 (A1555G Mutant, Br-Derivative), PDB code: 3bnt was solved by J.Kondo, E.Westhof, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.43 / 2.30
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	74.865, 74.865, 22.537, 90.00, 90.00, 120.00
R / Rfree (%)	21.7 / 25.5

The structure of Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]CL3 (A1555G Mutant, Br-Derivative) also contains other interesting chemical elements:

Cobalt	(Co)	1 atom
Bromine	(Br)	1 atom

The binding sites of Sodium atom in the Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]CL3 (A1555G Mutant, Br-Derivative) (pdb code 3bnt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]CL3 (A1555G Mutant, Br-Derivative), PDB code: 3bnt:

Sodium binding site 1 out of 1 in the Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]CL3 (A1555G Mutant, Br-Derivative)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]CL3 (A1555G Mutant, Br-Derivative) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na23 b:26.3 occ:1.00 O3' A:C22 2.6 23.7 1.0 O2' A:C22 2.9 28.2 1.0 C3' A:C22 3.6 26.8 1.0 C2' A:C22 3.7 26.6 1.0 C4' A:C22 4.5 27.8 1.0 O A:HOH51 4.9 31.8 1.0

J.Kondo, E.Westhof. The Bacterial and Mitochondrial Ribosomal A-Site Molecular Switches Possess Different Conformational Substates Nucleic Acids Res. V. 36 2654 2008.
ISSN: ISSN 0305-1048
PubMed: 18346970
DOI: 10.1093/NAR/GKN112