Sodium in PDB 3bn1: Crystal Structure of Gdp-Perosamine Synthase

The structure of Crystal Structure of Gdp-Perosamine Synthase, PDB code: 3bn1 was solved by P.D.Cook, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	50.271, 152.933, 105.726, 90.00, 102.09, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Sodium atom in the Crystal Structure of Gdp-Perosamine Synthase (pdb code 3bn1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Gdp-Perosamine Synthase, PDB code: 3bn1:

Sodium binding site 1 out of 1 in the Crystal Structure of Gdp-Perosamine Synthase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Gdp-Perosamine Synthase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na373 b:42.7 occ:1.00 O A:LEU296 2.5 13.8 1.0 O A:HOH594 2.5 44.7 1.0 O A:GLU294 2.5 20.2 1.0 O A:HOH455 2.7 22.4 1.0 O A:HOH435 2.8 21.3 1.0 C A:GLU294 3.5 93.1 1.0 C A:LEU296 3.6 11.1 1.0 N A:LEU296 3.9 12.0 1.0 O A:HOH600 3.9 37.5 1.0 CA A:LEU296 4.2 23.2 1.0 C A:GLY295 4.2 14.5 1.0 CA A:GLU294 4.2 27.7 1.0 O A:GLY293 4.4 11.8 1.0 N A:GLY295 4.5 17.3 1.0 N A:SER297 4.6 19.8 1.0 CB A:LEU296 4.6 12.8 1.0 O A:HOH678 4.7 26.6 1.0 O A:GLY295 4.7 18.1 1.0 CA A:GLY295 4.7 17.1 1.0 O A:THR298 4.8 11.2 1.0 CA A:SER297 4.8 14.0 1.0

P.D.Cook, H.M.Holden. Gdp-Perosamine Synthase: Structural Analysis and Production of A Novel Trideoxysugar Biochemistry V. 47 2833 2008.
ISSN: ISSN 0006-2960
PubMed: 18247575
DOI: 10.1021/BI702430D