Sodium in PDB 3bkc: Crystal Structure of Anti-Amyloid Beta Fab WO2 (P21, Formb)

The structure of Crystal Structure of Anti-Amyloid Beta Fab WO2 (P21, Formb), PDB code: 3bkc was solved by L.A.Miles, K.S.Wun, G.A.Crespi, M.Fodero-Tavoletti, D.Galatis, C.J.Bageley, K.Beyreuther, C.L.Masters, R.Cappai, W.J.Mckinstry, K.J.Barnham, M.W.Parker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.57 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.404, 111.164, 53.090, 90.00, 103.78, 90.00
R / Rfree (%)	17.9 / 23.6

The binding sites of Sodium atom in the Crystal Structure of Anti-Amyloid Beta Fab WO2 (P21, Formb) (pdb code 3bkc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Anti-Amyloid Beta Fab WO2 (P21, Formb), PDB code: 3bkc:

Sodium binding site 1 out of 1 in the Crystal Structure of Anti-Amyloid Beta Fab WO2 (P21, Formb)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Anti-Amyloid Beta Fab WO2 (P21, Formb) within 5.0Å range: probe atom residue distance (Å) B Occ H:Na217 b:2.0 occ:1.00 OD2 H:ASP54 1.6 12.5 1.0 OD2 H:ASP56 1.9 21.0 1.0 CG H:ASP56 2.7 18.9 1.0 CG H:ASP54 2.8 17.9 1.0 OD1 H:ASP56 2.8 15.6 1.0 OD1 H:ASP54 3.2 17.0 1.0 CB H:ASP56 4.0 18.1 1.0 CB H:ASP54 4.1 16.4 1.0

L.A.Miles, K.S.Wun, G.A.Crespi, M.T.Fodero-Tavoletti, D.Galatis, C.J.Bagley, K.Beyreuther, C.L.Masters, R.Cappai, W.J.Mckinstry, K.J.Barnham, M.W.Parker. Amyloid-Beta-Anti-Amyloid-Beta Complex Structure Reveals An Extended Conformation in the Immunodominant B-Cell Epitope. J.Mol.Biol. V. 377 181 2008.
ISSN: ISSN 0022-2836
PubMed: 18237744
DOI: 10.1016/J.JMB.2007.12.036