Sodium in PDB 3bjp: Urate Oxidase Cyanide Uric Acid Ternary Complex

All present enzymatic activity of Urate Oxidase Cyanide Uric Acid Ternary Complex:
1.7.3.3;

The structure of Urate Oxidase Cyanide Uric Acid Ternary Complex, PDB code: 3bjp was solved by L.Gabison, T.Prange, N.Colloc'h, M.El Hajji, B.Castro, M.Chiadmi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.80
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	79.936, 94.994, 104.288, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 24.3

The binding sites of Sodium atom in the Urate Oxidase Cyanide Uric Acid Ternary Complex (pdb code 3bjp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Urate Oxidase Cyanide Uric Acid Ternary Complex, PDB code: 3bjp:

Sodium binding site 1 out of 1 in the Urate Oxidase Cyanide Uric Acid Ternary Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Urate Oxidase Cyanide Uric Acid Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:12.0 occ:1.00 O A:HOH488 2.5 29.4 1.0 OE1 A:GLU136 2.5 44.0 1.0 O A:TYR91 2.5 15.9 1.0 O A:ILE88 2.5 25.1 1.0 O A:ILE94 2.5 14.2 1.0 O A:ASN92 3.1 36.8 1.0 C A:ILE88 3.5 16.2 1.0 C A:ASN92 3.5 21.9 1.0 C A:TYR91 3.5 25.8 1.0 C A:ILE94 3.5 8.5 1.0 CD A:GLU136 3.5 46.4 1.0 CA A:ASN92 3.7 31.0 1.0 CA A:ILE88 3.8 19.3 1.0 N A:ILE94 3.9 18.6 1.0 N A:ASN92 4.0 30.3 1.0 ND1 A:HIS95 4.1 25.1 1.0 OE2 A:GLU136 4.1 44.1 1.0 CA A:ILE94 4.2 13.8 1.0 CB A:ILE88 4.2 12.2 1.0 N A:HIS93 4.3 23.8 1.0 N A:HIS95 4.5 14.0 1.0 CG A:GLU136 4.5 44.0 1.0 CA A:HIS95 4.5 18.7 1.0 CB A:ILE94 4.6 13.3 1.0 CE1 A:HIS95 4.7 23.9 1.0 N A:GLU89 4.7 17.0 1.0 C A:HIS93 4.7 13.8 1.0 O A:HOH528 4.7 38.1 1.0 CA A:TYR91 4.8 12.9 1.0 O A:PHE87 4.8 16.1 1.0 N A:TYR91 4.9 17.5 1.0

L.Gabison, T.Prange, N.Colloc'h, M.El Hajji, B.Castro, M.Chiadmi. Structural Analysis of Urate Oxidase in Complex with Its Natural Substrate Inhibited By Cyanide: Mechanistic Implications Bmc Struct.Biol. V. 8 32 2008.
ISSN: ESSN 1472-6807
PubMed: 18638417
DOI: 10.1186/1472-6807-8-32