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Sodium in PDB 3b9b: Structure of the E2 Beryllium Fluoride Complex of the Serca CA2+-Atpase

Enzymatic activity of Structure of the E2 Beryllium Fluoride Complex of the Serca CA2+-Atpase

All present enzymatic activity of Structure of the E2 Beryllium Fluoride Complex of the Serca CA2+-Atpase:
3.6.3.8;

Protein crystallography data

The structure of Structure of the E2 Beryllium Fluoride Complex of the Serca CA2+-Atpase, PDB code: 3b9b was solved by C.Olesen, M.Picard, A.M.L.Winther, J.P.Morth, J.V.Moller, P.Nissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.35 / 2.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.600, 114.600, 229.300, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 27.1

Other elements in 3b9b:

The structure of Structure of the E2 Beryllium Fluoride Complex of the Serca CA2+-Atpase also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of the E2 Beryllium Fluoride Complex of the Serca CA2+-Atpase (pdb code 3b9b). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the E2 Beryllium Fluoride Complex of the Serca CA2+-Atpase, PDB code: 3b9b:

Sodium binding site 1 out of 1 in 3b9b

Go back to Sodium Binding Sites List in 3b9b
Sodium binding site 1 out of 1 in the Structure of the E2 Beryllium Fluoride Complex of the Serca CA2+-Atpase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the E2 Beryllium Fluoride Complex of the Serca CA2+-Atpase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na995

b:69.6
occ:1.00
 O A:LEU711 3.1 31.0 1.0
O A:ALA714 3.2 34.0 1.0
OE1 A:GLN244 3.2 73.2 1.0
N A:GLY717 3.5 32.4 1.0
O A:LYS712 3.7 47.0 1.0
O A:ALA730 4.0 35.6 1.0
C A:ILE716 4.0 35.6 1.0
C A:LYS712 4.1 28.7 1.0
CD A:GLN244 4.1 68.8 1.0
CA A:ILE716 4.1 32.3 1.0
CA A:LYS712 4.2 23.6 1.0
C A:LEU711 4.2 25.7 1.0
O A:HOH1059 4.3 43.0 1.0
C A:ALA714 4.3 34.0 1.0
CA A:GLY717 4.3 30.6 1.0
N A:ILE716 4.4 28.7 1.0
C A:GLU715 4.4 36.7 1.0
O A:GLU715 4.4 41.4 1.0
CB A:GLU732 4.6 52.8 1.0
NE2 A:GLN244 4.6 72.8 1.0
N A:LYS712 4.7 27.4 1.0
N A:GLU732 4.8 50.2 1.0
N A:ALA714 4.9 23.1 1.0
O A:ILE716 5.0 33.7 1.0
N A:LYS713 5.0 31.1 1.0

Reference:

C.Olesen, M.Picard, A.M.L.Winther, C.Gyrup, J.P.Morth, C.Oxvig, J.V.Moller, P.Nissen. The Structural Basis of Calcium Transport By the Calcium Pump. Nature V. 450 1036 2007.
ISSN: ISSN 0028-0836
PubMed: 18075584
DOI: 10.1038/NATURE06418
Page generated: Mon Oct 7 06:01:40 2024

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