Sodium in PDB 3b76: Crystal Structure of the Third Pdz Domain of Human Ligand-of-Numb Protein-X (LNX1) in Complex with the C-Terminal Peptide From the Coxsackievirus and Adenovirus Receptor

The structure of Crystal Structure of the Third Pdz Domain of Human Ligand-of-Numb Protein-X (LNX1) in Complex with the C-Terminal Peptide From the Coxsackievirus and Adenovirus Receptor, PDB code: 3b76 was solved by E.Ugochukwu, N.Burgess-Brown, G.Berridge, J.Elkins, G.Bunkoczi, A.C.W.Pike, M.Sundstrom, C.H.Arrowsmith, J.Weigelt, A.M.Edwards, O.Gileadi, F.Von Delft, D.Doyle, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.71 / 1.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.782, 58.449, 73.741, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 20.5

The binding sites of Sodium atom in the Crystal Structure of the Third Pdz Domain of Human Ligand-of-Numb Protein-X (LNX1) in Complex with the C-Terminal Peptide From the Coxsackievirus and Adenovirus Receptor (pdb code 3b76). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Third Pdz Domain of Human Ligand-of-Numb Protein-X (LNX1) in Complex with the C-Terminal Peptide From the Coxsackievirus and Adenovirus Receptor, PDB code: 3b76:

Sodium binding site 1 out of 1 in the Crystal Structure of the Third Pdz Domain of Human Ligand-of-Numb Protein-X (LNX1) in Complex with the C-Terminal Peptide From the Coxsackievirus and Adenovirus Receptor


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Third Pdz Domain of Human Ligand-of-Numb Protein-X (LNX1) in Complex with the C-Terminal Peptide From the Coxsackievirus and Adenovirus Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:14.5 occ:1.00 O A:HIS432 2.6 17.7 1.0 O A:TRP435 2.7 26.1 1.0 OD1 A:ASP436 2.7 28.9 1.0 O A:HOH115 2.8 36.7 1.0 O A:HOH136 2.8 37.7 1.0 O A:ALA430 2.8 17.8 1.0 C A:TRP435 3.6 26.2 1.0 C A:ALA430 3.6 17.0 1.0 C A:HIS432 3.7 17.2 1.0 CG A:ASP436 4.0 36.8 1.0 CA A:ALA430 4.0 19.8 1.0 CB A:ALA430 4.1 23.9 1.0 O A:ARG433 4.2 18.8 1.0 N A:ASP436 4.3 20.1 1.0 N A:TRP435 4.3 23.9 1.0 N A:HIS432 4.3 12.7 1.0 C A:ARG433 4.4 17.4 1.0 O A:HOH14 4.5 20.7 1.0 CA A:TRP435 4.5 29.1 1.0 CA A:ASP436 4.5 18.6 1.0 CA A:ARG433 4.6 12.9 1.0 N A:ARG433 4.6 14.3 1.0 CA A:HIS432 4.6 14.1 1.0 N A:SER431 4.7 21.7 1.0 C A:SER431 4.7 15.8 1.0 OD2 A:ASP436 4.7 41.5 1.0 O A:HOH114 4.8 37.4 1.0 CB A:ASP436 4.9 22.0 1.0

E.Ugochukwu, N.Burgess-Brown, G.Berridge, J.Elkins, G.Bunkoczi, A.C.W.Pike, M.Sundstrom, C.H.Arrowsmith, J.Weigelt, A.M.Edwards, O.Gileadi, F.Von Delft, D.Doyle. Crystal Structure of the Third Pdz Domain of Human Ligand-of-Numb Protein-X (LNX1) in Complex with the C-Terminal Peptide From the Coxsackievirus and Adenovirus Receptor. To Be Published.