Sodium in PDB 3b6e: Crystal Structure of Human Dech-Box Rna Helicase MDA5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain

The structure of Crystal Structure of Human Dech-Box Rna Helicase MDA5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain, PDB code: 3b6e was solved by T.Karlberg, M.Welin, C.H.Arrowsmith, H.Berglund, R.D.Busam, R.Collins, L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, I.Johansson, A.Kallas, T.Kotenyova, L.Lehtio, M.Moche, M.E.Nilsson, P.Nordlund, T.Nyman, C.Persson, J.Sagemark, L.Svensson, A.G.Thorsell, L.Tresaugues, S.Van Den Berg, J.Weigelt, L.Holmberg-Schiavone, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.97 / 1.60
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	72.830, 72.830, 182.780, 90.00, 90.00, 120.00
R / Rfree (%)	17.9 / 20.4

The binding sites of Sodium atom in the Crystal Structure of Human Dech-Box Rna Helicase MDA5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain (pdb code 3b6e). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Dech-Box Rna Helicase MDA5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain, PDB code: 3b6e:

Sodium binding site 1 out of 1 in the Crystal Structure of Human Dech-Box Rna Helicase MDA5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Dech-Box Rna Helicase MDA5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na600 b:21.4 occ:1.00 O A:HOH83 2.7 35.5 1.0 OG1 A:THR331 3.2 16.6 1.0 CD A:PRO330 3.4 20.1 1.0 NE2 A:GLN312 3.5 20.3 1.0 NH2 A:ARG309 3.6 22.2 1.0 CG A:PRO330 3.6 20.2 1.0 CA A:GLY334 3.8 13.5 1.0 N A:THR331 3.9 17.1 1.0 N A:PRO330 4.1 19.5 1.0 CB A:LEU329 4.1 19.7 1.0 CD2 A:LEU329 4.2 25.8 1.0 O A:HOH143 4.2 46.0 1.0 CB A:THR331 4.2 17.3 1.0 NE A:ARG309 4.3 19.6 1.0 CZ A:ARG309 4.4 21.6 1.0 CG2 A:THR331 4.5 15.4 1.0 N A:GLY334 4.5 13.3 1.0 C A:GLY334 4.5 15.3 1.0 CG A:LEU329 4.6 22.7 1.0 CD A:GLN312 4.6 20.6 1.0 CA A:THR331 4.6 16.4 1.0 O A:THR331 4.6 16.0 1.0 O A:HOH9 4.7 19.5 1.0 C A:PRO330 4.7 19.7 1.0 CG A:GLN312 4.7 16.3 1.0 CD1 A:LEU329 4.7 24.8 1.0 CB A:PRO330 4.7 19.8 1.0 CA A:PRO330 4.7 20.0 1.0 C A:LEU329 4.8 18.6 1.0 CA A:LEU329 4.9 19.2 1.0 N A:LYS335 4.9 14.8 1.0

T.Karlberg, M.Welin, C.H.Arrowsmith, H.Berglund, R.D.Busam, R.Collins, L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, I.Johansson, A.Kallas, T.Kotenyova, L.Lehtio, M.Moche, M.E.Nilsson, P.Nordlund, T.Nyman, C.Persson, J.Sagemark, L.Svensson, A.G.Thorsell, L.Tresaugues, S.Van Den Berg, J.Weigelt, L.Holmberg-Schiavone. Human Dech-Box Rna Helicase MDA5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain. To Be Published.