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Sodium in PDB 3az7: Crystal Structure of Pt/T-Hewl

Enzymatic activity of Crystal Structure of Pt/T-Hewl

All present enzymatic activity of Crystal Structure of Pt/T-Hewl:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Pt/T-Hewl, PDB code: 3az7 was solved by S.Abe, M.Tsujimoto, K.Yoneda, M.Ohba, T.Hikage, M.Takano, S.Kitagawa, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.31 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.412, 78.412, 36.558, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 30.3

Other elements in 3az7:

The structure of Crystal Structure of Pt/T-Hewl also contains other interesting chemical elements:

Platinum (Pt) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Pt/T-Hewl (pdb code 3az7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Pt/T-Hewl, PDB code: 3az7:

Sodium binding site 1 out of 1 in 3az7

Go back to Sodium Binding Sites List in 3az7
Sodium binding site 1 out of 1 in the Crystal Structure of Pt/T-Hewl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Pt/T-Hewl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na135

b:52.9
occ:1.00
O A:SER60 2.0 42.5 1.0
O A:CYS64 2.4 38.4 1.0
OG A:SER72 2.4 54.5 1.0
O A:ARG73 2.6 52.5 1.0
O A:HOH155 2.6 47.4 1.0
C A:SER60 3.2 41.5 1.0
CB A:SER72 3.3 55.7 1.0
C A:CYS64 3.5 38.8 1.0
C A:ARG73 3.6 52.8 1.0
N A:ARG73 3.9 54.1 1.0
CA A:SER60 4.0 40.2 1.0
CA A:ASN65 4.0 39.9 1.0
C A:SER72 4.1 55.0 1.0
N A:ASN65 4.2 39.4 1.0
CB A:SER60 4.2 38.0 1.0
N A:ARG61 4.2 43.1 1.0
CA A:SER72 4.3 55.5 1.0
O A:ARG61 4.3 46.5 1.0
N A:CYS64 4.3 38.5 1.0
PT A:PT132 4.3 0.9 0.5
C A:ARG61 4.3 45.6 1.0
CA A:ARG73 4.4 54.1 1.0
N A:ASN74 4.4 51.7 1.0
CA A:ARG61 4.5 45.9 1.0
CA A:CYS64 4.5 38.8 1.0
CB A:THR69 4.6 47.1 1.0
CA A:ASN74 4.6 50.1 1.0
O A:SER72 4.6 55.0 1.0
ND2 A:ASN65 4.6 42.4 1.0
N A:TRP62 4.7 45.2 1.0
N A:ASP66 4.7 39.9 1.0
CB A:ASN74 4.9 49.5 1.0
N A:TRP63 4.9 40.9 1.0
CB A:ASN65 4.9 40.3 1.0
C A:ASN65 5.0 39.5 1.0
C A:TRP62 5.0 43.5 1.0

Reference:

S.Abe, M.Tsujimoto, K.Yoneda, M.Ohba, T.Hikage, M.Takano, S.Kitagawa, T.Ueno. Porous Protein Crystals As Reaction Vessels For Controlling Magnetic Properties of Nanoparticles Small V. 8 1314 2012.
ISSN: ISSN 1613-6810
PubMed: 22383363
DOI: 10.1002/SMLL.201101866
Page generated: Thu Oct 29 04:21:34 2020

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