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Sodium in PDB 3ato: Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation

Enzymatic activity of Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation

All present enzymatic activity of Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation:
3.2.1.17;

Protein crystallography data

The structure of Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation, PDB code: 3ato was solved by L.Ito, K.Shiraki, K.Hasegawa, T.Kumasaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.57 / 1.17
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.171, 77.171, 36.898, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 17.5

Other elements in 3ato:

The structure of Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation also contains other interesting chemical elements:

Chlorine (Cl) 10 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation (pdb code 3ato). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation, PDB code: 3ato:

Sodium binding site 1 out of 1 in 3ato

Go back to Sodium Binding Sites List in 3ato
Sodium binding site 1 out of 1 in the Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na214

b:10.3
occ:0.47
 O A:SER60 2.2 17.9 1.0
O A:HOH346 2.3 17.3 1.0
O A:ARG73 2.4 22.6 1.0
O A:HOH304 2.4 15.6 1.0
OG A:SER72 2.6 20.7 1.0
O A:CYS64 2.7 13.4 1.0
CB A:SER72 3.3 20.1 1.0
C A:SER60 3.3 14.1 1.0
C A:ARG73 3.4 21.0 1.0
C A:CYS64 3.8 12.3 1.0
N A:ARG73 3.9 21.0 1.0
CA A:SER60 4.0 12.4 1.0
CA A:ASN65 4.1 12.1 1.0
C A:SER72 4.2 22.3 1.0
CA A:ARG73 4.2 20.1 1.0
CB A:SER60 4.2 11.5 1.0
CA A:SER72 4.3 20.1 1.0
N A:ASN74 4.4 18.6 1.0
N A:ARG61 4.4 15.9 1.0
N A:ASN65 4.4 12.0 1.0
CB A:THR69 4.5 13.2 1.0
C A:ARG61 4.5 18.1 1.0
O A:ARG61 4.6 19.2 1.0
N A:CYS64 4.7 12.8 1.0
CA A:ASN74 4.7 16.7 1.0
O A:HOH335 4.7 32.8 1.0
N A:TRP62 4.7 14.9 1.0
CA A:ARG61 4.7 18.1 1.0
CL A:CL211 4.8 13.9 0.6
N A:ASP66 4.8 10.1 1.0
O A:THR69 4.8 17.4 1.0
O A:SER72 4.8 24.1 1.0
OD1 A:ASN65 4.8 18.0 1.0
CA A:CYS64 4.9 12.8 1.0
CG2 A:THR69 4.9 14.5 1.0
CB A:ASN74 4.9 17.2 1.0
OG1 A:THR69 4.9 12.8 1.0
OG A:SER60 4.9 10.4 1.0

Reference:

L.Ito, K.Shiraki, K.Hasegawa, T.Kumasaka. Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation To Be Published.
Page generated: Mon Oct 7 05:53:28 2024

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