Atomistry » Sodium » PDB 3ajn-3b1q » 3atn
Atomistry »
  Sodium »
    PDB 3ajn-3b1q »
      3atn »

Sodium in PDB 3atn: Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation

Enzymatic activity of Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation

All present enzymatic activity of Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation:
3.2.1.17;

Protein crystallography data

The structure of Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation, PDB code: 3atn was solved by L.Ito, K.Shiraki, K.Hasegawa, T.Kumasaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.39 / 1.17
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 76.744, 76.744, 37.078, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 17.4

Other elements in 3atn:

The structure of Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation also contains other interesting chemical elements:

Chlorine (Cl) 10 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation (pdb code 3atn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation, PDB code: 3atn:

Sodium binding site 1 out of 1 in 3atn

Go back to Sodium Binding Sites List in 3atn
Sodium binding site 1 out of 1 in the Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na211

b:6.9
occ:0.49
O A:SER60 2.3 14.1 1.0
O A:HOH320 2.4 15.3 1.0
O A:HOH317 2.4 10.5 1.0
O A:ARG73 2.5 16.4 1.0
O A:CYS64 2.5 9.0 1.0
OG A:SER72 2.6 15.2 1.0
CB A:SER72 3.3 14.8 1.0
C A:SER60 3.4 11.2 1.0
C A:ARG73 3.5 14.4 1.0
C A:CYS64 3.6 8.5 1.0
N A:ARG73 3.9 15.9 1.0
CA A:ASN65 3.9 8.8 1.0
CA A:SER60 4.0 10.1 1.0
C A:SER72 4.1 15.9 1.0
N A:ASN65 4.2 8.5 1.0
CB A:SER60 4.3 9.6 1.0
CA A:ARG73 4.3 14.8 1.0
CA A:SER72 4.3 15.1 1.0
N A:ASN74 4.4 13.3 1.0
C A:ARG61 4.4 14.2 1.0
N A:ARG61 4.5 12.2 1.0
O A:ARG61 4.5 15.5 1.0
N A:CYS64 4.5 9.4 1.0
OD1 A:ASN65 4.6 11.8 1.0
N A:ASP66 4.6 7.9 1.0
CA A:ASN74 4.6 11.6 1.0
O A:SER72 4.6 17.3 1.0
CB A:THR69 4.7 10.9 1.0
CL A:CL208 4.7 9.4 0.6
CA A:CYS64 4.7 8.7 1.0
CA A:ARG61 4.7 14.5 1.0
CB A:ASN74 4.8 11.2 1.0
C A:ASN65 4.8 8.0 1.0
N A:TRP62 4.8 12.6 1.0
CB A:ASN65 4.8 9.9 1.0
O A:HOH438 4.8 28.4 1.0
O A:HOH393 5.0 21.2 1.0

Reference:

L.Ito, K.Shiraki, K.Hasegawa, T.Kumasaka. Glycine Ethyl Ester Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation To Be Published.
Page generated: Mon Oct 7 05:52:41 2024

Last articles

Zn in 9FD2
Zn in 9GUW
Zn in 9GUX
Zn in 9F7C
Zn in 9GUR
Zn in 9F7A
Zn in 9DDE
Zn in 9DBY
Zn in 9EBZ
Zn in 9DGG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy