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Sodium in PDB 3ajn: Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis

Enzymatic activity of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis

All present enzymatic activity of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis:
3.2.1.17;

Protein crystallography data

The structure of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis, PDB code: 3ajn was solved by L.Ito, K.Shiraki, K.Hasegawa, T.Kumasaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.05
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.510, 78.510, 36.962, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 16.3

Other elements in 3ajn:

The structure of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis (pdb code 3ajn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis, PDB code: 3ajn:

Sodium binding site 1 out of 1 in 3ajn

Go back to Sodium Binding Sites List in 3ajn
Sodium binding site 1 out of 1 in the Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Basis of Glycine Amide on Suppression of Protein Aggregation By High Resolution X-Ray Analysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na136

b:15.8
occ:1.00
 O A:SER60 2.2 14.7 1.0
O A:HOH177 2.4 12.8 1.0
O A:HOH186 2.4 17.4 1.0
O A:ARG73 2.5 17.8 1.0
OG A:SER72 2.6 18.2 1.0
O A:CYS64 2.6 11.3 1.0
CB A:SER72 3.3 17.1 1.0
C A:SER60 3.3 12.4 1.0
C A:ARG73 3.5 16.3 1.0
C A:CYS64 3.7 11.0 1.0
N A:ARG73 3.9 18.6 1.0
CA A:ASN65 4.0 10.7 1.0
CA A:SER60 4.0 9.6 1.0
C A:SER72 4.2 18.4 1.0
CA A:ARG73 4.3 15.9 1.0
CB A:SER60 4.3 9.4 1.0
N A:ASN65 4.3 10.6 1.0
C A:ARG61 4.3 14.8 1.0
N A:ASN74 4.3 15.3 1.0
N A:ARG61 4.3 12.4 1.0
CA A:SER72 4.4 18.4 1.0
CA A:ARG61 4.5 15.3 1.0
O A:ARG61 4.5 19.3 1.0
CB A:THR69 4.5 11.0 1.0
N A:CYS64 4.6 11.0 1.0
O A:HOH148 4.6 9.7 1.0
N A:ASP66 4.7 9.0 1.0
OD1 A:ASN65 4.7 14.2 1.0
CA A:ASN74 4.7 14.2 1.0
N A:TRP62 4.8 12.8 1.0
O A:SER72 4.8 19.6 1.0
CA A:CYS64 4.8 10.8 1.0
O A:THR69 4.9 15.0 1.0
CB A:ASN74 4.9 14.3 1.0
C A:ASN65 4.9 9.2 1.0
CB A:ASN65 4.9 12.0 1.0
CG2 A:THR69 5.0 13.4 1.0
OG1 A:THR69 5.0 10.4 1.0

Reference:

L.Ito, K.Shiraki, M.Makino, K.Hasegawa, T.Kumasaka. Glycine Amide Shielding on the Aromatic Surfaces of Lysozyme: Implication For Suppression of Protein Aggregation Febs Lett. V. 585 555 2011.
ISSN: ISSN 0014-5793
PubMed: 21237160
DOI: 10.1016/J.FEBSLET.2011.01.008
Page generated: Mon Oct 7 05:50:28 2024

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