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Sodium in PDB 2ycm: Inhibitors of Herbicidal Target Ispd

Enzymatic activity of Inhibitors of Herbicidal Target Ispd

All present enzymatic activity of Inhibitors of Herbicidal Target Ispd:
2.7.7.60;

Protein crystallography data

The structure of Inhibitors of Herbicidal Target Ispd, PDB code: 2ycm was solved by H.W.Hoeffken, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 73.61 / 1.80
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 75.060, 75.060, 220.820, 90.00, 90.00, 120.00
R / Rfree (%) 19.7 / 23.252

Other elements in 2ycm:

The structure of Inhibitors of Herbicidal Target Ispd also contains other interesting chemical elements:

Copper (Cu) 1 atom
Chlorine (Cl) 1 atom
Cadmium (Cd) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Inhibitors of Herbicidal Target Ispd (pdb code 2ycm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Inhibitors of Herbicidal Target Ispd, PDB code: 2ycm:

Sodium binding site 1 out of 1 in 2ycm

Go back to Sodium Binding Sites List in 2ycm
Sodium binding site 1 out of 1 in the Inhibitors of Herbicidal Target Ispd


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Inhibitors of Herbicidal Target Ispd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1304

b:52.8
occ:1.00
OE2 A:GLU139 2.1 55.0 1.0
O A:HOH2015 2.2 64.7 1.0
OE1 A:GLU139 2.4 57.0 1.0
CD A:GLU139 2.5 52.6 1.0
CG A:GLU139 4.0 47.1 1.0
O A:HOH2014 4.5 48.7 1.0
OH A:TYR140 4.6 39.7 1.0
CB A:GLU139 4.9 40.4 1.0

Reference:

M.C.Witschel, H.W.Hoeffken, M.Seet, L.Parra, T.Mietzner, F.Thater, R.Niggeweg, F.Rohl, B.Illarionov, F.Rohdich, J.Kaiser, M.Fischer, A.Bacher, F.Diederich. Inhibitors of the Herbicidal Target Ispd: Allosteric Site Binding. Angew.Chem.Int.Ed.Engl. V. 50 7931 2011.
ISSN: ISSN 1433-7851
PubMed: 21766403
DOI: 10.1002/ANIE.201102281
Page generated: Tue Dec 15 06:00:28 2020

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