Sodium in PDB 2yc3: Inhibitors of the Herbicidal Target Ispd

All present enzymatic activity of Inhibitors of the Herbicidal Target Ispd:
2.7.7.60;

The structure of Inhibitors of the Herbicidal Target Ispd, PDB code: 2yc3 was solved by H.W.Hoeffken, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.30 / 1.40
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	74.600, 74.600, 220.500, 90.00, 90.00, 120.00
R / Rfree (%)	16.248 / 20.408

The structure of Inhibitors of the Herbicidal Target Ispd also contains other interesting chemical elements:

Copper	(Cu)	2 atoms
Chlorine	(Cl)	1 atom
Cadmium	(Cd)	3 atoms

The binding sites of Sodium atom in the Inhibitors of the Herbicidal Target Ispd (pdb code 2yc3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Inhibitors of the Herbicidal Target Ispd, PDB code: 2yc3:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Inhibitors of the Herbicidal Target Ispd


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Inhibitors of the Herbicidal Target Ispd within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1302 b:61.4 occ:1.00 NA A:NA1305 0.4 43.0 1.0 OE2 A:GLU139 2.1 46.5 1.0 OE1 A:GLU139 2.3 42.3 1.0 CD A:GLU139 2.5 40.3 1.0 CG A:GLU139 3.9 33.2 1.0 O A:HOH2031 4.0 55.6 1.0 O A:HOH2029 4.4 33.5 1.0 OH A:TYR140 4.5 30.4 1.0 CB A:GLU139 4.8 27.2 1.0

Sodium binding site 2 out of 2 in the Inhibitors of the Herbicidal Target Ispd


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Inhibitors of the Herbicidal Target Ispd within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1305 b:43.0 occ:1.00 NA A:NA1302 0.4 61.4 1.0 OE2 A:GLU139 2.3 46.5 1.0 OE1 A:GLU139 2.4 42.3 1.0 CD A:GLU139 2.7 40.3 1.0 CG A:GLU139 4.1 33.2 1.0 O A:HOH2031 4.1 55.6 1.0 O A:HOH2029 4.4 33.5 1.0 OH A:TYR140 4.7 30.4 1.0 CB A:GLU139 5.0 27.2 1.0

M.C.Witschel, H.W.Hoeffken, M.Seet, L.Parra, T.Mietzner, F.Thater, R.Niggeweg, F.Rohl, B.Illarionov, F.Rohdich, J.Kaiser, M.Fischer, A.Bacher, F.Diederich. Inhibitors of the Herbicidal Target Ispd: Allosteric Site Binding. Angew.Chem.Int.Ed.Engl. V. 50 7931 2011.
ISSN: ISSN 1433-7851
PubMed: 21766403
DOI: 10.1002/ANIE.201102281