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Sodium in PDB 2y8v: Structure of Chitinase, Chic, From Aspergillus Fumigatus.

Enzymatic activity of Structure of Chitinase, Chic, From Aspergillus Fumigatus.

All present enzymatic activity of Structure of Chitinase, Chic, From Aspergillus Fumigatus.:
3.2.1.14;

Protein crystallography data

The structure of Structure of Chitinase, Chic, From Aspergillus Fumigatus., PDB code: 2y8v was solved by C.L.Rush, A.W.Schuettelkopf, L.M.Gay, D.M.F.Van Aalten, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 82.76 / 1.99
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.137, 145.748, 82.899, 90.00, 93.29, 90.00
R / Rfree (%) 16.871 / 21.348

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Chitinase, Chic, From Aspergillus Fumigatus. (pdb code 2y8v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Chitinase, Chic, From Aspergillus Fumigatus., PDB code: 2y8v:

Sodium binding site 1 out of 1 in 2y8v

Go back to Sodium Binding Sites List in 2y8v
Sodium binding site 1 out of 1 in the Structure of Chitinase, Chic, From Aspergillus Fumigatus.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Chitinase, Chic, From Aspergillus Fumigatus. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na1291

b:43.0
occ:1.00
O C:GLN214 4.3 27.1 1.0
CG C:GLU181 4.4 21.6 1.0
O C:ARG178 4.5 21.7 1.0
CB C:ARG178 4.5 21.0 1.0
CE2 C:TRP216 4.5 18.6 1.0
NE2 C:GLN182 4.6 41.9 1.0
C C:GLY215 4.6 22.9 1.0
O C:GLY215 4.6 23.0 1.0
CA C:ARG178 4.6 20.8 1.0
CZ2 C:TRP216 4.6 17.9 1.0
CG C:ARG178 4.7 21.2 1.0
CB C:GLU181 4.7 20.3 1.0
CD2 C:TRP216 4.7 18.5 1.0
CG C:GLN182 4.7 32.8 1.0
NE1 C:TRP216 4.8 20.4 1.0
N C:TRP216 4.9 21.9 1.0
CA C:GLY215 4.9 23.4 1.0
CH2 C:TRP216 5.0 17.2 1.0

Reference:

C.L.Rush, D.M.F.Van Aalten. Structure of Chitinase, Chic, From Aspergillus Fumigatus. To Be Published.
Page generated: Tue Dec 15 06:00:23 2020

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