Sodium in PDB 2y00: Turkey BETA1 Adrenergic Receptor with Stabilising Mutations and Bound Partial Agonist Dobutamine (Crystal DOB92)

The structure of Turkey BETA1 Adrenergic Receptor with Stabilising Mutations and Bound Partial Agonist Dobutamine (Crystal DOB92), PDB code: 2y00 was solved by A.Warne, R.Moukhametzianov, J.G.Baker, R.Nehme, P.C.Edwards, A.G.W.Leslie, G.F.X.Schertler, C.G.Tate, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	95.65 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	90.000, 60.500, 101.900, 90.00, 110.20, 90.00
R / Rfree (%)	22.6 / 25.6

The binding sites of Sodium atom in the Turkey BETA1 Adrenergic Receptor with Stabilising Mutations and Bound Partial Agonist Dobutamine (Crystal DOB92) (pdb code 2y00). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Turkey BETA1 Adrenergic Receptor with Stabilising Mutations and Bound Partial Agonist Dobutamine (Crystal DOB92), PDB code: 2y00:

Sodium binding site 1 out of 1 in the Turkey BETA1 Adrenergic Receptor with Stabilising Mutations and Bound Partial Agonist Dobutamine (Crystal DOB92)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Turkey BETA1 Adrenergic Receptor with Stabilising Mutations and Bound Partial Agonist Dobutamine (Crystal DOB92) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1359 b:40.4 occ:1.00 O A:ASP195 2.5 39.4 1.0 O A:CYS198 2.5 39.2 1.0 O A:HOH2005 2.5 42.0 1.0 O A:CYS192 2.6 37.6 1.0 C A:CYS198 3.6 37.9 1.0 C A:CYS192 3.6 39.0 1.0 C A:ASP195 3.7 40.7 1.0 CA A:TYR193 4.0 35.3 1.0 C A:TYR193 4.1 35.9 1.0 O A:TYR193 4.1 35.9 1.0 CB A:CYS198 4.2 38.8 1.0 N A:TYR193 4.2 37.2 1.0 CA A:CYS198 4.2 38.6 1.0 SG A:CYS192 4.3 55.6 1.0 N A:CYS198 4.4 36.5 1.0 CA A:PRO196 4.4 39.3 1.0 N A:PRO196 4.5 39.7 1.0 N A:ASP195 4.5 40.6 1.0 OG A:SER111 4.6 43.1 1.0 CA A:ASP195 4.6 39.8 1.0 N A:CYS199 4.7 36.7 1.0 N A:GLN194 4.7 38.5 1.0 CA A:CYS192 4.8 41.3 1.0 C A:PRO196 4.9 39.3 1.0 CA A:CYS199 4.9 36.1 1.0

A.Warne, R.Moukhametzianov, J.G.Baker, R.Nehme, P.C.Edwards, A.G.W.Leslie, G.F.X.Schertler, C.G.Tate. The Structural Basis For Agonist and Partial Agonist Action on A BETA1-Adrenergic Receptor Nature V. 469 241 2011.
ISSN: ISSN 0028-0836
PubMed: 21228877
DOI: 10.1038/NATURE09746