Sodium in the structure of Mouse Profilin Iia in Complex With A Double Repeat From the FH1 Domain of MDIA1 (pdb 2v8f)

The binding sites of Sodium atom in the structure of Mouse Profilin Iia in Complex With A Double Repeat From the FH1 Domain of MDIA1 (pdb code 2v8f). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2v8f structure was solved by P.KURSULA, I.KURSULA, J.DOWNER, W.WITKE, M.WILMANNS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-1.1 Space group P1211 a (A) 38.380 b (A) 37.270 c (A) 88.750 alpha (°) 90.00 beta (°) 98.58 gamma (°) 90.00 Rfactor (%) n/a Rfree (%) n/a Sodium Binding Sites: Sodium binding site 1 out of 1 in 2v8f Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2v8f. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Phe59, A: Arg74, A: Asp75, A: Hoh2103, A: Hoh2104, conact list: Atom Atom Distance (A) Na CE2 A:Phe59 4.57 Na CZ A:Phe59 3.83 Na CE1 A:Phe59 4.65 Na O A:Arg74 4.93 Na N A:Arg74 4.83 Na CB A:Arg74 4.32 Na CB A:Arg74 4.35 Na C A:Arg74 3.72 Na CG A:Arg74 3.99 Na CG A:Arg74 4.08 Na CA A:Arg74 3.66 Na O A:Asp75 3.41 Na N A:Asp75 2.84 Na CB A:Asp75 3.95 Na C A:Asp75 3.91 Na CA A:Asp75 3.70 Na O A:Hoh2103 2.97 Na O A:Hoh2104 4.87 interactive model: