Sodium in PDB 2v8c: Mouse Profilin Iia in Complex with the Proline-Rich Domain of Vasp

The structure of Mouse Profilin Iia in Complex with the Proline-Rich Domain of Vasp, PDB code: 2v8c was solved by P.Kursula, J.Downer, W.Witke, M.Wilmanns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.98
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.730, 47.090, 68.580, 90.00, 90.00, 90.00
R / Rfree (%)	14.5 / 18.1

The binding sites of Sodium atom in the Mouse Profilin Iia in Complex with the Proline-Rich Domain of Vasp (pdb code 2v8c). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mouse Profilin Iia in Complex with the Proline-Rich Domain of Vasp, PDB code: 2v8c:

Sodium binding site 1 out of 1 in the Mouse Profilin Iia in Complex with the Proline-Rich Domain of Vasp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mouse Profilin Iia in Complex with the Proline-Rich Domain of Vasp within 5.0Å range: probe atom residue distance (Å) B Occ A:Na3001 b:35.5 occ:1.00 O A:HOH528 3.5 20.5 1.0 N A:ALA35 3.5 14.3 1.0 O A:HOH530 3.8 25.5 1.0 CA A:THR34 4.0 11.1 1.0 OE1 A:GLN4 4.2 31.9 1.0 CB A:ALA35 4.2 16.1 1.0 C A:THR34 4.3 12.6 1.0 O A:HOH513 4.4 47.4 1.0 CG2 A:THR34 4.4 9.8 1.0 CA A:ALA35 4.5 16.4 1.0 CB A:THR34 4.8 10.3 1.0 O A:ALA33 4.8 10.2 1.0 O A:HOH505 4.8 39.8 1.0

P.Kursula, I.Kursula, M.Massimi, Y.H.Song, J.Downer, W.A.Stanley, W.Witke, M.Wilmanns. High-Resolution Structural Analysis of Mammalian Profilin 2A Complex Formation with Two Physiological Ligands: the Formin Homology 1 Domain of MDIA1 and the Proline-Rich Domain of Vasp. J.Mol.Biol. V. 375 270 2008.
ISSN: ISSN 0022-2836
PubMed: 18001770
DOI: 10.1016/J.JMB.2007.10.050