Atomistry » Sodium » PDB 2uzz-2vrp » 2v6g
Atomistry »
  Sodium »
    PDB 2uzz-2vrp »
      2v6g »

Sodium in PDB 2v6g: Structure of Progesterone 5BETA-Reductase From Digitalis Lanata in Complex with Nadp

Protein crystallography data

The structure of Structure of Progesterone 5BETA-Reductase From Digitalis Lanata in Complex with Nadp, PDB code: 2v6g was solved by A.Thorn, C.Egerer-Sieber, C.Jaeger, V.Herl, F.Mueller-Uri, W.Kreis, Y.A.Muller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.34 / 2.3
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.590, 78.590, 178.100, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 21.2

Other elements in 2v6g:

The structure of Structure of Progesterone 5BETA-Reductase From Digitalis Lanata in Complex with Nadp also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Progesterone 5BETA-Reductase From Digitalis Lanata in Complex with Nadp (pdb code 2v6g). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Progesterone 5BETA-Reductase From Digitalis Lanata in Complex with Nadp, PDB code: 2v6g:

Sodium binding site 1 out of 1 in 2v6g

Go back to Sodium Binding Sites List in 2v6g
Sodium binding site 1 out of 1 in the Structure of Progesterone 5BETA-Reductase From Digitalis Lanata in Complex with Nadp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Progesterone 5BETA-Reductase From Digitalis Lanata in Complex with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1392

b:56.3
occ:1.00
O A:HOH1072 2.4 42.0 1.0
O A:HOH1030 3.1 51.2 1.0
OD2 A:ASP252 3.2 34.4 1.0
NE A:ARG369 3.4 34.5 1.0
OD1 A:ASP252 3.8 32.4 1.0
CG A:ASP252 3.9 33.5 1.0
CD A:ARG369 4.1 33.5 1.0
NE1 A:TRP378 4.2 33.1 1.0
OD2 A:ASP254 4.2 37.0 1.0
CZ2 A:TRP378 4.3 33.3 1.0
OG A:SER377 4.3 41.4 1.0
CB A:ALA374 4.4 35.7 1.0
O A:HOH1145 4.4 38.6 1.0
CE2 A:TRP378 4.4 33.7 1.0
CZ A:ARG369 4.4 35.0 1.0
NH2 A:ARG369 4.5 36.0 1.0
O A:HOH1073 4.6 48.2 1.0
CA A:ALA374 4.6 36.5 1.0
CB A:ASP254 4.7 33.5 1.0
CG A:ARG369 4.8 33.7 1.0
CG A:ASP254 4.8 34.7 1.0
CB A:SER377 4.9 38.8 1.0

Reference:

A.Thorn, C.Egerer-Sieber, C.Jaeger, V.Herl, F.Mueller-Uri, W.Kreis, Y.A.Muller. The Crystal Structure of Progesterone 5{Beta}- Reductase From Digitalis Lanata Defines A Novel Class of Short Chain Dehydrogenases/Reductases. J.Biol.Chem. V. 283 17260 2008.
ISSN: ISSN 0021-9258
PubMed: 18032383
DOI: 10.1074/JBC.M706185200
Page generated: Tue Dec 15 05:56:25 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy