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Sodium in PDB 2ozt: Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1

Protein crystallography data

The structure of Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1, PDB code: 2ozt was solved by V.N.Malashkevich, J.Bonanno, R.Toro, J.M.Sauder, K.D.Schwinn, K.T.Bain, J.M.Adams, C.Reyes, I.Rooney, T.Gheyi, S.R.Wasserman, S.Emtage, S.K.Burley, S.C.Almo, New York Sgx Research Center For Structuralgenomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.70 / 1.42
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 39.641, 113.498, 148.155, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 20.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1 (pdb code 2ozt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1, PDB code: 2ozt:

Sodium binding site 1 out of 1 in 2ozt

Go back to Sodium Binding Sites List in 2ozt
Sodium binding site 1 out of 1 in the Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na701

b:26.0
occ:1.00
OD1 A:ASP165 2.5 16.5 1.0
OE1 A:GLU220 2.7 16.1 1.0
OD2 A:ASP219 2.7 17.8 1.0
ND2 A:ASN167 3.2 20.0 1.0
CG A:ASP165 3.3 16.6 1.0
OD2 A:ASP165 3.3 18.7 1.0
CB A:ASP219 3.4 14.9 1.0
OE2 A:GLU220 3.4 18.6 1.0
CD A:GLU220 3.4 16.2 1.0
CG A:GLU194 3.5 15.9 1.0
CG A:ASP219 3.5 17.6 1.0
OE2 A:GLU194 3.5 20.1 1.0
CD A:GLU194 3.6 20.0 1.0
CB A:GLN195 3.7 14.1 1.0
O A:HOH946 3.7 41.0 1.0
CA A:ASN167 3.9 14.8 1.0
CG A:ASN167 4.0 19.4 1.0
N A:ASN167 4.0 13.6 1.0
CB A:GLU194 4.4 13.1 1.0
OE1 A:GLU194 4.4 21.8 1.0
CB A:ASN167 4.5 15.3 1.0
O A:GLU194 4.5 13.6 1.0
C A:GLU194 4.5 13.4 1.0
CG A:GLN195 4.6 14.0 1.0
OD1 A:ASP219 4.7 15.8 1.0
N A:GLU220 4.7 14.7 1.0
OD1 A:ASN167 4.7 22.7 1.0
CB A:ASP165 4.8 15.8 1.0
CA A:ASP219 4.8 13.4 1.0
N A:GLN195 4.8 12.4 1.0
CA A:GLN195 4.8 13.0 1.0
CG A:GLU220 4.9 16.3 1.0
C A:ASN167 5.0 15.2 1.0

Reference:

D.Odokonyero, A.Sakai, Y.Patskovsky, V.N.Malashkevich, A.A.Fedorov, J.B.Bonanno, E.V.Fedorov, R.Toro, R.Agarwal, C.Wang, N.D.Ozerova, W.S.Yew, J.M.Sauder, S.Swaminathan, S.K.Burley, S.C.Almo, M.E.Glasner. Loss of Quaternary Structure Is Associated with Rapid Sequence Divergence in the Osbs Family. Proc.Natl.Acad.Sci.Usa V. 111 8535 2014.
ISSN: ISSN 0027-8424
PubMed: 24872444
DOI: 10.1073/PNAS.1318703111
Page generated: Tue Dec 15 05:53:28 2020

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