Sodium in PDB 2ozt: Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1

The structure of Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1, PDB code: 2ozt was solved by V.N.Malashkevich, J.Bonanno, R.Toro, J.M.Sauder, K.D.Schwinn, K.T.Bain, J.M.Adams, C.Reyes, I.Rooney, T.Gheyi, S.R.Wasserman, S.Emtage, S.K.Burley, S.C.Almo, New York Sgx Research Center For Structuralgenomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.70 / 1.42
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	39.641, 113.498, 148.155, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 20.7

The binding sites of Sodium atom in the Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1 (pdb code 2ozt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1, PDB code: 2ozt:

Sodium binding site 1 out of 1 in the Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na701 b:26.0 occ:1.00 OD1 A:ASP165 2.5 16.5 1.0 OE1 A:GLU220 2.7 16.1 1.0 OD2 A:ASP219 2.7 17.8 1.0 ND2 A:ASN167 3.2 20.0 1.0 CG A:ASP165 3.3 16.6 1.0 OD2 A:ASP165 3.3 18.7 1.0 CB A:ASP219 3.4 14.9 1.0 OE2 A:GLU220 3.4 18.6 1.0 CD A:GLU220 3.4 16.2 1.0 CG A:GLU194 3.5 15.9 1.0 CG A:ASP219 3.5 17.6 1.0 OE2 A:GLU194 3.5 20.1 1.0 CD A:GLU194 3.6 20.0 1.0 CB A:GLN195 3.7 14.1 1.0 O A:HOH946 3.7 41.0 1.0 CA A:ASN167 3.9 14.8 1.0 CG A:ASN167 4.0 19.4 1.0 N A:ASN167 4.0 13.6 1.0 CB A:GLU194 4.4 13.1 1.0 OE1 A:GLU194 4.4 21.8 1.0 CB A:ASN167 4.5 15.3 1.0 O A:GLU194 4.5 13.6 1.0 C A:GLU194 4.5 13.4 1.0 CG A:GLN195 4.6 14.0 1.0 OD1 A:ASP219 4.7 15.8 1.0 N A:GLU220 4.7 14.7 1.0 OD1 A:ASN167 4.7 22.7 1.0 CB A:ASP165 4.8 15.8 1.0 CA A:ASP219 4.8 13.4 1.0 N A:GLN195 4.8 12.4 1.0 CA A:GLN195 4.8 13.0 1.0 CG A:GLU220 4.9 16.3 1.0 C A:ASN167 5.0 15.2 1.0

D.Odokonyero, A.Sakai, Y.Patskovsky, V.N.Malashkevich, A.A.Fedorov, J.B.Bonanno, E.V.Fedorov, R.Toro, R.Agarwal, C.Wang, N.D.Ozerova, W.S.Yew, J.M.Sauder, S.Swaminathan, S.K.Burley, S.C.Almo, M.E.Glasner. Loss of Quaternary Structure Is Associated with Rapid Sequence Divergence in the Osbs Family. Proc.Natl.Acad.Sci.Usa V. 111 8535 2014.
ISSN: ISSN 0027-8424
PubMed: 24872444
DOI: 10.1073/PNAS.1318703111