Sodium in PDB 2oyn: Crystal Structure of Cdp-Bound Protein MJ0056 From Methanococcus Jannaschii, Pfam DUF120

The structure of Crystal Structure of Cdp-Bound Protein MJ0056 From Methanococcus Jannaschii, Pfam DUF120, PDB code: 2oyn was solved by J.B.Bonanno, M.Dickey, K.T.Bain, C.Lau, R.Romero, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.85
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	63.480, 63.480, 73.117, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 23.9

The binding sites of Sodium atom in the Crystal Structure of Cdp-Bound Protein MJ0056 From Methanococcus Jannaschii, Pfam DUF120 (pdb code 2oyn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Cdp-Bound Protein MJ0056 From Methanococcus Jannaschii, Pfam DUF120, PDB code: 2oyn:

Sodium binding site 1 out of 1 in the Crystal Structure of Cdp-Bound Protein MJ0056 From Methanococcus Jannaschii, Pfam DUF120


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cdp-Bound Protein MJ0056 From Methanococcus Jannaschii, Pfam DUF120 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:19.2 occ:1.00 O A:THR43 2.3 15.9 1.0 OD1 A:ASN45 2.3 18.2 1.0 OG1 A:THR43 2.4 18.2 1.0 O A:HOH321 2.4 18.9 1.0 O1A A:CDP301 2.6 17.1 1.0 O3A A:CDP301 2.7 17.7 1.0 C A:THR43 3.2 16.8 1.0 PA A:CDP301 3.2 17.5 1.0 CG A:ASN45 3.4 17.0 1.0 CB A:THR43 3.5 16.9 1.0 O3B A:CDP301 3.6 17.5 1.0 CA A:THR43 3.6 16.9 1.0 PB A:CDP301 3.6 18.7 1.0 N A:THR43 3.7 17.4 1.0 O1B A:CDP301 3.8 18.8 1.0 O A:HOH311 4.0 17.9 1.0 ND2 A:ASN45 4.0 17.2 1.0 OE1 A:GLU107 4.2 24.3 1.0 O5' A:CDP301 4.2 19.1 1.0 N A:ASN45 4.2 14.4 1.0 N A:LEU44 4.2 15.3 1.0 N A:GLY18 4.4 21.8 1.0 O2A A:CDP301 4.4 19.3 1.0 CA A:GLY18 4.4 21.3 1.0 O A:HOH314 4.4 24.5 1.0 CB A:ASN45 4.6 15.0 1.0 CA A:LEU44 4.6 15.3 1.0 C A:LEU44 4.6 15.0 1.0 CG2 A:THR43 4.6 15.8 1.0 C2' A:CDP301 4.8 15.2 1.0 CD A:GLU107 4.9 24.2 1.0 CA A:ASN45 4.9 14.4 1.0 O2B A:CDP301 4.9 19.5 1.0 CG A:GLU107 5.0 21.4 1.0 C A:GLY42 5.0 17.7 1.0

J.B.Bonanno, M.Dickey, K.T.Bain, C.Lau, R.Romero, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Hypothetical Protein From Methanococcus Jannaschii Bound to Cdp To Be Published.